Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01810 ATGGAAGAGAAGAAGTTTATGTGCAAGTATTGCAGCAAGAGTTTCCCTTGTGGGAAGTCTCTTGGTGGTCACATCAGGACTCATATGATGAGTGACCATTCAGCTCCATCTCTAGCCAATGCTATGTTCAAGTTTGATGATGGAAGGAAGAGGAAGAGGGATTTGTTAGGTTCTGGAGATGATGGCCTAATTTATGGCCTTAGAGAGAACCCCAAGAAAACCACCAGGTTTGTGCATTCCAATGCCAATGCCACTTTGCAAATGGACAAGTTCTGTAAAGAATGTGGAAAAGGCTTTTCATCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAAAAAGACAAGGGTGTCAATATTGAGAAGAAGCACAAATTGGTTATGGATAGTCAATCTGATACGGAGACTTCTGCTCCAAGGAGATCCAAGAGAATGAAGTTCAAGACCCTTAGCAACCACCCTCCTCATCCTCCTTCTTCTTCTGTTTCAGAGGTTGAGCAAGAGCAAGAAGAGGTGGCAAGGTGTTTGATGTTGTTGTCCAAAGATTCTAGCTACAGGGGTCGTTTTGCTTTGGTTACAGAGTCTTCTGATAACAACTCGGTTGTTCTGGAAGGGAAATCACCTTCTGTTGATATCAATTATGGTAAGAACTCTGTGTCTAATGCTTATGACTATGAGCTTGTGGAGGAGGAGAAGGTGCACAAGGATGCCAAGTTAAAGTCTGCTGAGATTGGTTATGATTCTGATAATTCTGATTCTGGGTATTTTAGATATGGTCCTAAAAAGGTAGACTCAGATGATTCAAGTGATGGGTTTTTCAGGAATGAAATAAAGCCTTCAAAGGTGGGATACATGACTGGGTTTGAGGATTATGATGTTGAATCAAAGAAGATGCTGAGCAGAGATTTGGACAATGATAGAAAAGTTGGAGCTACAAGGAGGTTTGATTCAAGGAAGAGGCTCAACTATGATTCTGTTGGTCAAATTTTAGTTGGGGGTTCTACCAATGGAACCTACCAGCATGGTGGTAAAAGGTTGAAGTATGAGTGCTTGAACAGTGAAAGGGATATTGGTTTTGGCTCTGATTATGATTCAGCATATGAGAGTGATGAAAACAGCACTGATACTGATTCTTATCCTGCTTTAAAGGCTCACAACAGCAGGAACCTCAATGGAAAGAAGTCCAGCAAGGGAAAGAAGAAAATGAAGTCAAAGAAAAACAAGGAACATGAGTGTCCAATTTGCAACAAAATTTTCAGGTCAGGCCAAGCTTTGGGAGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGAAGAAAACACACTGGTGATTAGACCAGGTGCTCCTGCTGTTCCTTGCCTAATTGATCTTAATCTACCTGCTCCTGTTGATGAATAG 1401 0.4161 MEEKKFMCKYCSKSFPCGKSLGGHIRTHMMSDHSAPSLANAMFKFDDGRKRKRDLLGSGDDGLIYGLRENPKKTTRFVHSNANATLQMDKFCKECGKGFSSLKALCGHMACHSEKDKGVNIEKKHKLVMDSQSDTETSAPRRSKRMKFKTLSNHPPHPPSSSVSEVEQEQEEVARCLMLLSKDSSYRGRFALVTESSDNNSVVLEGKSPSVDINYGKNSVSNAYDYELVEEEKVHKDAKLKSAEIGYDSDNSDSGYFRYGPKKVDSDDSSDGFFRNEIKPSKVGYMTGFEDYDVESKKMLSRDLDNDRKVGATRRFDSRKRLNYDSVGQILVGGSTNGTYQHGGKRLKYECLNSERDIGFGSDYDSAYESDENSTDTDSYPALKAHNSRNLNGKKSSKGKKKMKSKKNKEHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPGAPAVPCLIDLNLPAPVDE. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01810 466 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Seca10g01810 466 MobiDBLite consensus disorder prediction 391 407 - -
Seca10g01810 466 MobiDBLite consensus disorder prediction 363 409 - -
Seca10g01810 466 Gene3D Classic Zinc Finger 1 116 - -
Seca10g01810 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Seca10g01810 466 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 466 - -
Seca10g01810 466 MobiDBLite consensus disorder prediction 373 390 - -
Seca10g01810 466 MobiDBLite consensus disorder prediction 129 143 - -
Seca10g01810 466 MobiDBLite consensus disorder prediction 129 165 - -
Seca10g01810 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 411 433 IPR013087 -
Seca10g01810 466 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Seca10g01810 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Seca10g01810 466 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Seca10g01810 466 Pfam C2H2-type zinc finger 6 29 - -
Seca10g01810 466 Pfam C2H2-type zinc finger 92 114 - -
Seca10g01810 466 Pfam C2H2-type zinc finger 411 433 - -
Seca10g01810 466 SUPERFAMILY beta-beta-alpha zinc fingers 91 433 IPR036236 -
Seca10g01810 466 ProSitePatterns Zinc finger C2H2 type domain signature. 413 433 IPR013087 -
Seca10g01810 466 SMART c2h2final6 6 28 IPR013087 -
Seca10g01810 466 SMART c2h2final6 90 112 IPR013087 -
Seca10g01810 466 SMART c2h2final6 411 433 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01810 Seca-Chr10 19976396 19977868 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g01810 zf-C2H2_6 4.7e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01810 10 19976396 19977868 Seca10g01810 10 19976396 19977868 ECH