Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01733 ATGCCTCAAGAGATGGTTATTAAGGACTCAGCCATAAAGCTCTTTGGTAGAACGATTTCTCTGCCACGCAACACCGAGGTCTCTGCCTCTGCCTCTGCCAATCATTCTTCCTCTGTTCCTCCTGAAGATTTCTCTGATCTTAGTCCTCCTTCATCTTCATCTTCTCCACGTGAAGTCAGCACTGCAACGAAACATGAAGCAGAGAAGGATGAGGTACGTGCCATGGTGGTACTGGAACCATCAAAGAAAGAACTCACCTCAGCACAAGATAATGAGGCCTCACATCAAACCACAGAGGATTTAAAATCTCCCACATCTTCAGACATTTTTGAGAACCCCAAGACTCCCTCAGCTGAAAGAGAAACCTCTTTACTGAACTCCTCAAAAAATGGAGAACAGAGTGATACAAGCATGTCACAAGACAAAACTCCAAAGAAACCAGACAAGATACTTCCATGCCCACGATGCAACAGCATGGACACCAAATTTTGTTACTACAACAACTACAATGTCAACCAACCTCGTCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGAGGAACCATGAGAAATGTGCCTGTAGGTGCAGGTCGCCGCAAGAACAAAAACTCTTCTTCTTCTTCTTCTGCTGCTGCTTCACATTATCGTCAAATGATGGTTCCTGAGACCCTTCAAGCAGCTAAACTCAACCCAACCAATGGATTGCACAGTTCTATGTTGGAAAATGCAGCAGCTGTTTTAACCTTTGGACCAGATTCTCCTCTATGTGATTCCATGGCTTCTGTGTTGAGCCTTGCTGATAAAACACAACACCATAATGGTGTTGTTCTAAATGGGTTCCATGCACCTAAGCAGAACCATTTTATTTCATGTGGTAGGGAAGATAATAATATTCATAACAATGGGAATGATTTCTCAGCTATTATGGCTTCAACTTCATCTGAGAAGAGAGGCAATGCTAATTCACATGAAGAATCACTGGATAATAAGAGTTATCAAGGTTTGCCTCCTCAATTTCCCTTCCAAGGTGTTTCTTCCCCTTGGCCTCATCCATGGAACCCTGCATTTTGCCAACCAAGTTACCCTGTGTCCTTCTATCCCACACCACCATACTGGGGTGGTTGTTTGCCACCATCTTGGAGGGTACACCCTATCTCTCCTCAATCTTCTGTTAACCAATCTGCTCCTACTTTGGGGAAACATTCAAGGAATGGGGACATCCTCTTCTCATCCAACTCAGAAAAAGAAAAGCTTGACTCAGAGAGTAGTGTGTTGATCCCCAAGACACTGAGAATCGATGACCCTAATGAAGCTGCAAAGAGTTCTATATGGTCAACACTAGGGGTCAAGAATGAGAAGGGAAATTCTCTAAATGGAGGAGGGCTTTTCAAGGCATTTGCATACAAGTCCAAGGGTGGTGATGACAAGAATCATGTGGTTGAAACATCTCCAGTGTTGCAAGCCAACCCTGCAGCTTTATCAAGGTCTCTAACTTTCCATGAGAGAACTTGA 1518 0.4401 MPQEMVIKDSAIKLFGRTISLPRNTEVSASASANHSSSVPPEDFSDLSPPSSSSSPREVSTATKHEAEKDEVRAMVVLEPSKKELTSAQDNEASHQTTEDLKSPTSSDIFENPKTPSAERETSLLNSSKNGEQSDTSMSQDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSSSSSAAASHYRQMMVPETLQAAKLNPTNGLHSSMLENAAAVLTFGPDSPLCDSMASVLSLADKTQHHNGVVLNGFHAPKQNHFISCGREDNNIHNNGNDFSAIMASTSSEKRGNANSHEESLDNKSYQGLPPQFPFQGVSSPWPHPWNPAFCQPSYPVSFYPTPPYWGGCLPPSWRVHPISPQSSVNQSAPTLGKHSRNGDILFSSNSEKEKLDSESSVLIPKTLRIDDPNEAAKSSIWSTLGVKNEKGNSLNGGGLFKAFAYKSKGGDDKNHVVETSPVLQANPAALSRSLTFHERT. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01733 505 PANTHER CYCLIC DOF FACTOR 2 8 505 IPR045174 GO:0003700|GO:0006355
Seca10g01733 505 MobiDBLite consensus disorder prediction 26 60 - -
Seca10g01733 505 Pfam Dof domain, zinc finger 148 205 IPR003851 GO:0003677|GO:0006355
Seca10g01733 505 MobiDBLite consensus disorder prediction 26 151 - -
Seca10g01733 505 ProSitePatterns Zinc finger Dof-type signature. 153 189 IPR003851 GO:0003677|GO:0006355
Seca10g01733 505 MobiDBLite consensus disorder prediction 200 215 - -
Seca10g01733 505 MobiDBLite consensus disorder prediction 90 138 - -
Seca10g01733 505 MobiDBLite consensus disorder prediction 195 215 - -
Seca10g01733 505 MobiDBLite consensus disorder prediction 389 416 - -
Seca10g01733 505 MobiDBLite consensus disorder prediction 389 411 - -
Seca10g01733 505 ProSiteProfiles Zinc finger Dof-type profile. 151 205 IPR003851 GO:0003677|GO:0006355
Seca10g01733 505 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01733 Seca-Chr10 19139377 19142343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01733 5 504 C2C2-Dof Transcription Factor Family AT3G47500 39.423 1.45e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca10g01733 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01733 - - lang:109358999 610.912