Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi77g00072 ATGGCTCAAGTACTAGAAAGTGGCCAAAACAGTGAAGGGATTAAGCTGTTTGGCACAACGATTAAGTTACATGGAAGGCAAAGAAACGAAGATAGTGAAGATGGAGCAGAGGATCAGGAGAAAAGGCCTGATAAGATCATACATGCCCAAGATGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTCCGCAACGTCCCCGTAGGTGCCGGCCGCCGAAAGGCCAAGCCACCATGCCTTGGCCCCAATGGTTTCCCGGAGTTTGATGGATCCACCGTCCACCAGTTTGGTTTAGATGAATGGCATCTTGCCACCATGGTTCACGGTGATTTCCGGCAGCTTTTTGCATCTAAACGGCGGAGGACTAGCTCAGCTCAGCAGGAAGGTCAATAA 393 0.5267 MAQVLESGQNSEGIKLFGTTIKLHGRQRNEDSEDGAEDQEKRPDKIIHAQDGCQRYWTAGGALRNVPVGAGRRKAKPPCLGPNGFPEFDGSTVHQFGLDEWHLATMVHGDFRQLFASKRRRTSSAQQEGQ 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi77g00072 130 MobiDBLite consensus disorder prediction 16 44 - -
Sebi77g00072 130 Pfam Dof domain, zinc finger 51 76 IPR003851 GO:0003677|GO:0006355
Sebi77g00072 130 PANTHER CYCLIC DOF FACTOR 2 52 76 IPR045174 GO:0003700|GO:0006355
Sebi77g00072 130 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi77g00072 Sebi-Chr77 902217 903460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi77g00072 9 124 C2C2-Dof Transcription Factor Family AT2G34140 40.361 2.06e-24 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi77g00072 zf-Dof 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi77g00072 - - pvu:PHAVU_002G238400g 154.066