Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi5g00108 ATGCAGAACGGATTTGAAGAATCAACTAGTGCTGAAGTGGATGTTCCTTGGAAGGAAGTATCTGGCAAACAGACTGATCCTCAAGAAGATGCTAATGGTATTGCAAACATGTATAAAAACCCTACTCTTAAACTGGTAGCCAAAGTAGTTCATAGAACAAATGAACATAGGTCTGCTAAAAGAGAAATTGATCATGAAGAAAAAGTTCTTAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTATTTCAATAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACTGCTGGGGGGACAATTAGAAATGTTCCTGTTGGAGCTGGTAAGCGCAAAAATAAGCACTCAGCTTTGCAGTATTGTCAGGTTCCTGTGACATCTGATGCAGCATCTGTCATCCAGACAGATTCCAACCCTGCTAGTGATAAGCATTTTTCATCTAGCATACTTCCTGTGACTCCAAGACCTGTTATTGAAATAGGGAACATCCTAAGTCTCAGAGAGGAAGCTCCTCTTAGTACATCCCTTGAAACTATGTTAAATCTCAAGGGCCAGACAAAAATTGAAGTGGACCCTTCTACTGTCAAAGATGATGGTGAGGAGCCTTCCAGCTCTTCTATGAGAAATGTTGAATCCAAGGAGAAGGAATGTTCAGAAAATATGATAGAGCAGGTTGGTTTGACACAACACTTTAATGGTTTAATTCCTTTACATTCACTTCATTGTTATCCTGTTCCTCCATGGGCTTACCAATGGAATCCATGTTGGAATGCTATAGCTTTTAGGCCTGGTAGCATCACTTCCAGTCCTGCTTACATGGGTTCTGCAACCATGATGGCAGTTCCTGGCTTCTCCACACCAACAGTAGAATTGCCATTGGCACCTTCTTCATTTTGGGGTTGCATGCCAAGCTGGGCTGGAGAAAAGGATGAGTCTTCATTGGTTGGATCTACATTTAGTTGCATCTCATCATCACCTTCATCTTCAGTTAGCAACAGTACCTTTTCTGGTAATAGGTCTCCAACCTTAGGAAAACATTCTAGAGATGGAAGTACACCAGGTGAAGATGCAATGCAACCAAATCTTTGGGTACCTAAGACTGTAAGAATTAATGATCCAGAAGAGGCTGCAAAGAGTTTTATATGGTCAACATTGGAAACAAAATCTGAACAGAACAAACCCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCCAGTTCACATACTTTAGATGATAATCAAATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGCTCTGAATCCTTTCAAGAAAGCATTTGA 1365 0.4051 MQNGFEESTSAEVDVPWKEVSGKQTDPQEDANGIANMYKNPTLKLVAKVVHRTNEHRSAKREIDHEEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKHSALQYCQVPVTSDAASVIQTDSNPASDKHFSSSILPVTPRPVIEIGNILSLREEAPLSTSLETMLNLKGQTKIEVDPSTVKDDGEEPSSSSMRNVESKEKECSENMIEQVGLTQHFNGLIPLHSLHCYPVPPWAYQWNPCWNAIAFRPGSITSSPAYMGSATMMAVPGFSTPTVELPLAPSSFWGCMPSWAGEKDESSLVGSTFSCISSSPSSSVSNSTFSGNRSPTLGKHSRDGSTPGEDAMQPNLWVPKTVRINDPEEAAKSFIWSTLETKSEQNKPIMKGSVFKSFEPKSNASSHTLDDNQILRANPAAFSRSESFQESI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi5g00108 454 MobiDBLite consensus disorder prediction 205 228 - -
Sebi5g00108 454 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Sebi5g00108 454 MobiDBLite consensus disorder prediction 340 363 - -
Sebi5g00108 454 MobiDBLite consensus disorder prediction 1 32 - -
Sebi5g00108 454 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Sebi5g00108 454 Pfam Dof domain, zinc finger 74 131 IPR003851 GO:0003677|GO:0006355
Sebi5g00108 454 PANTHER CYCLIC DOF FACTOR 2 23 453 IPR045174 GO:0003700|GO:0006355
Sebi5g00108 454 MobiDBLite consensus disorder prediction 206 228 - -
Sebi5g00108 454 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi5g00108 Sebi-Chr5 2154569 2155933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi5g00108 66 453 C2C2-Dof Transcription Factor Family AT5G39660 39.089 1.97e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi5g00108 zf-Dof 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi5g00108 - - gmx:102666857 627.091