Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi53g00008 ATGGCAAAGGGGGTTGTTTGGTCATCCTCCAAACTAGTGCTATCAATCACCGTCCTCATAACAATCGGTGTGGGCTTAACAGAGGGTCAACCAGAGGCACATTTCAAGTGCACCGTAGAGAACGCCACGTGTCATGGCCTAGCCGATTACTCAAACCCAAACGGCACCACACTACGCCACATCCAAACACTGTTCAACGTGAAGCACCTCCCAGACATACTCGGCGTTAACAACCTCCCCATCAACACCACAGGCTCTTACAGTGTGGGCCCCAACCAGGCCATTAAGGTGCCGTACCCTTGCAGATGCAGCAACCAAACGGGGCTTTCGGACCGGGTTCCGGTTTACAAAATCAAGCGAGGAGACACACTGGATGACATAGCTACAACGGTTTTTGCGCGTTTGGTTAAATACCAGCAGATCCAAGAAGCGAATAAGGCAAAGATACCGGACGCGAATAACATAACTGCTGGGGACACGATTTGGATTCCTCTGCCGTGTAGCTGTGATGAGGTGGATGGGAGCAGTGTGGTGCACTATGCACACGTTGTGATTGCAGGGAGTACCGTTGAGGGGATTGCTCAACAGTATGGTACCACACAGGGGATTCTTCTCTCTGTTAACGACATGACTGACCCTAAATCCCTTCAGGCCGGTCAGATTCTTGATGTTCCCCTCAAAGCTTGTTCCTCGAGTGTGAGGAATGATTCATTGGACTCCCCTTTGCTTGTCCCAAATGCTACTTATGTTTACACTGCTAATGAATGTGTCAAATGCAAGTGCGACTCCAATTACAATGCGAGCCATCCCAACACAAACCAATCAATCAATGGTCCGTTTGCCCTTCAATGGAATGCTCAAAGGACGTCTTCATTGGCAACATAA 885 0.4938 MAKGVVWSSSKLVLSITVLITIGVGLTEGQPEAHFKCTVENATCHGLADYSNPNGTTLRHIQTLFNVKHLPDILGVNNLPINTTGSYSVGPNQAIKVPYPCRCSNQTGLSDRVPVYKIKRGDTLDDIATTVFARLVKYQQIQEANKAKIPDANNITAGDTIWIPLPCSCDEVDGSSVVHYAHVVIAGSTVEGIAQQYGTTQGILLSVNDMTDPKSLQAGQILDVPLKACSSSVRNDSLDSPLLVPNATYVYTANECVKCKCDSNYNASHPNTNQSINGPFALQWNAQRTSSLAT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi53g00008 294 ProSiteProfiles LysM domain profile. 114 163 IPR018392 -
Sebi53g00008 294 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Sebi53g00008 294 CDD LysM 182 224 IPR018392 -
Sebi53g00008 294 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 279 - -
Sebi53g00008 294 SUPERFAMILY LysM domain 115 165 IPR036779 -
Sebi53g00008 294 Gene3D LysM domain 172 239 IPR036779 -
Sebi53g00008 294 SUPERFAMILY LysM domain 180 225 IPR036779 -
Sebi53g00008 294 Pfam LysM domain 116 164 IPR018392 -
Sebi53g00008 294 Pfam LysM domain 182 225 IPR018392 -
Sebi53g00008 294 CDD LysM 115 163 IPR018392 -
Sebi53g00008 294 Gene3D LysM domain 114 171 IPR036779 -
Sebi53g00008 294 SMART LysM_2 115 164 IPR018392 -
Sebi53g00008 294 SMART LysM_2 181 225 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi53g00008 Sebi-Chr53 116359 118138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi53g00008 12 263 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 51.190 3.46e-84 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi53g00008 - - lang:109351135 363.229