Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi532g00003 ATGCAGAGCACTCTGTTTCTCCTTTTGCTTCTTCAAGCTTTGATCACTGCGAGCTGTAAATCCACCATTGAGCCATGCACAAACTCAGACTCTTGCAATGCACTGTTAGGTTACACGCTTTACACGGACCTTAAGGTCTCTGAGGTAGCTTCCCTCTTCCAAATCGACCCTATCGCTCTTCTCACCGCCAATGCCATTGATATTTCCTACCCTGACGTGGAACACCACATCCTTCCTTCGAAGCTTTACCTCAAAATCCCCATCTCATGTTCCTGCGTTGATGGGATTCGTAAATCGGTGTCTACCAATTACAAGACGCGTCCTTCAGATACTCTTTCTTCCATTGCTGACTCAATCTATGGGGGTTTGGTCTCTGCTGATCAACTCAGAGAGGCCAATTCCATAACTGACCCTTCAGTGCTTGATGTAGGGCAGAACCTTGTGGTGCCTCTTCCTTGCACTTGCTTCAATGGTTCTGATAACTCTTTGCCAGCAATTTACCTCTCCTATGTGGTTCAGCCGCTTGATAGTTTGGCTTCAATTGCTGCTAGGTATTTCACTACTCTTACTGATTTGATGAATGTTAATGCCATGGGGAGCACAGCTATCTCTGATGGTGATATCCTTGCTATTCCAATACCAGCTTGTGCTTCAAATTTTCCAAAATATGCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGCCACTGTGTACAGTGTAGCTGTGGACCACGAAACCTAAATTTGTACTGTATGCCAGCTTCTCTAGCTGTTTCTTGTTCTAGCATGCAATGTAAAAACAGCAATCTCATGCTAGGGAATGTTACAGTGCAACAGAGTAGTGCTGGTTGCAATGTTACTTCTTGCAGTTATGATGGTATTGTTAATGGCACCATAGCAACAATGTTGTCCGCATCCCTTCAGCCTAGATGTCCAGGGCCACAGGAATTCCCTCCTCTTATTGCCCCACCTACATCTGTTCAGAGGGAATCGGTATTTGGACCAGCACCGGCACCATCACCGCAGTCAGATGGAACTGGTCTGACATCACCCAAATCCTCACTGGTGCCTGCAACAGGGCTTCCGGGATTCTCTCCTGCAAATGGCCCTGTTAGTGGGATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATCACCCACTTTGACATCTGCTCTTGTGTTATTACTTGTCAAGTTGACGATCCCTGTGGCACTGTAA 1245 0.4635 MQSTLFLLLLLQALITASCKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKTRPSDTLSSIADSIYGGLVSADQLREANSITDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVQPLDSLASIAARYFTTLTDLMNVNAMGSTAISDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQSSAGCNVTSCSYDGIVNGTIATMLSASLQPRCPGPQEFPPLIAPPTSVQRESVFGPAPAPSPQSDGTGLTSPKSSLVPATGLPGFSPANGPVSGISSGASAACSLVKPSPTLTSALVLLLVKLTIPVAL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi532g00003 414 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 4 321 - -
Sebi532g00003 414 Gene3D LysM domain 157 220 IPR036779 -
Sebi532g00003 414 SUPERFAMILY LysM domain 168 213 IPR036779 -
Sebi532g00003 414 SUPERFAMILY LysM domain 103 151 IPR036779 -
Sebi532g00003 414 MobiDBLite consensus disorder prediction 348 362 - -
Sebi532g00003 414 CDD LysM 169 211 IPR018392 -
Sebi532g00003 414 SMART LysM_2 103 150 IPR018392 -
Sebi532g00003 414 SMART LysM_2 169 212 IPR018392 -
Sebi532g00003 414 MobiDBLite consensus disorder prediction 333 367 - -
Sebi532g00003 414 Pfam LysM domain 104 150 IPR018392 -
Sebi532g00003 414 Pfam LysM domain 170 212 IPR018392 -
Sebi532g00003 414 ProSiteProfiles LysM domain profile. 168 211 IPR018392 -
Sebi532g00003 414 CDD LysM 104 149 IPR018392 -
Sebi532g00003 414 Gene3D LysM domain 96 156 IPR036779 -
Sebi532g00003 414 ProSiteProfiles LysM domain profile. 102 149 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi532g00003 Sebi-Chr532 35243 37695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi532g00003 5 389 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.103 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi532g00003 - - gmx:100777292 675.626