Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi414g00004 AAGATCATAGCGTGCCCAAGATGCAAGAGCATGGAAACCAAATTCTGTTACTTCAACAACTATAACGTGAATCAGCCAAGGCATTTCTGCAAGAGTTGTCAGAGGTACTGGACAGCTGGTGGGGCCCTCCGGAACGTGCCAGTCGGGGCCGGCCGACGGAAGGCCAAGCTGCCGTGTCGTGGAGAAGGTGGATTTCCGGATTGCTTCTATGAAACTAATTCAGATGATGATGAGCAGAGATTTGGGTTGGAGCATGTTGCTACGCCTCAGAGTGATTTCCGGCAGGTTTTTCCGGCCAAACGGCGGAGGACGACCTCAGCTCAGCCTCAAGGTCAATAA 339 0.5221 KIIACPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKLPCRGEGGFPDCFYETNSDDDEQRFGLEHVATPQSDFRQVFPAKRRRTTSAQPQGQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi414g00004 112 Pfam Dof domain, zinc finger 2 56 IPR003851 GO:0003677|GO:0006355
Sebi414g00004 112 PANTHER CYCLIC DOF FACTOR 2 1 56 IPR045174 GO:0003700|GO:0006355
Sebi414g00004 112 ProSitePatterns Zinc finger Dof-type signature. 5 41 IPR003851 GO:0003677|GO:0006355
Sebi414g00004 112 ProSiteProfiles Zinc finger Dof-type profile. 3 57 IPR003851 GO:0003677|GO:0006355
Sebi414g00004 112 MobiDBLite consensus disorder prediction 93 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi414g00004 Sebi-Chr414 89965 90768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi414g00004 1 103 C2C2-Dof Transcription Factor Family AT1G29160 61.468 6.02e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi414g00004 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi414g00004 - - gmx:100820604 169.859