Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi272g00056 ATGGACACAGCTCAATGGCCACAGGAGATTGTGGTGAAACCAATAGAAGATATAGTAGTGACAACAAATACATGTCCAAAGCCTGCATCTGCAGTTGCTACTACTTTGGAGAGAAAGCCAAGGCCACAGAAAGAACAAGCTCTTAATTGTCCAAGGTGTCATTCAATCAACACCAAATTCTGTTACTACAACAACTACAGCCTCACTCAGCCTAGATATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCAGAAACATCCCTGTAGGAGGTGGTTCAAGGAAGAACAAGAGATCTAATTCTGTTTCCTCTTGTTCCATACCACCTCCAACCAAGAAGCTTCCTGATCTGATCACTCCTCCAGCAAGTTTATCACAAAATTGCACTCAAAACCCTAAGATCCATGATGGCCAAGATCTAAATTTGGCTTTCCCAACCACCACCACAAGAGATTTCAGAAATAATATCTCTGAAATGGTTCAAGTTCAACAAAATAACAACACCATGTCTGCTTCAGCTTCTTCCTCTTCTTCAATAACTACTACTGCCACCACTACTCAACTCTCAGCATTGGAGCTTCTTACTGGGATCAGTTCAAGGGGTTTGCATTCTTTCATGCCTTTGCCAGTTCCAGCTGATCCTAATTCTGTTTACACATGTGGTTTTCCCCTGCAAGATTTTAAGCCAACCCTGAATTTCACTTTAGATGGGATTGGAAGTGGGTATCCAAGTCTTCAGGGTGTTCAAGAAATAAATACTGGGAGGCTTTTGTTTCCATTTGAGGACTTAAAACAGGTGTCTAGCACCACCACAACAATGGATCAGAGTAATAAGGACCAACATCATGGAGATTCAACTGGGTATTGGACTGGAATGTTAGGAGGAGGATCATGGTAA 909 0.4224 MDTAQWPQEIVVKPIEDIVVTTNTCPKPASAVATTLERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSNSVSSCSIPPPTKKLPDLITPPASLSQNCTQNPKIHDGQDLNLAFPTTTTRDFRNNISEMVQVQQNNNTMSASASSSSSITTTATTTQLSALELLTGISSRGLHSFMPLPVPADPNSVYTCGFPLQDFKPTLNFTLDGIGSGYPSLQGVQEINTGRLLFPFEDLKQVSSTTTTMDQSNKDQHHGDSTGYWTGMLGGGSW 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi272g00056 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 180 IPR045174 GO:0003700|GO:0006355
Sebi272g00056 302 MobiDBLite consensus disorder prediction 97 112 - -
Sebi272g00056 302 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Sebi272g00056 302 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Sebi272g00056 302 MobiDBLite consensus disorder prediction 272 302 - -
Sebi272g00056 302 MobiDBLite consensus disorder prediction 89 118 - -
Sebi272g00056 302 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi272g00056 Sebi-Chr272 759345 760618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi272g00056 1 302 C2C2-Dof Transcription Factor Family AT4G24060 47.143 1.37e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi272g00056 zf-Dof 3.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi272g00056 - - tcc:18606009 399.053