Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi25g00026 ATGCCGTCGTCGGATTCCGGCGAGAATCGCCGCGCAACCAAGCCCCAGAACCGTGCCGGAGTTGCACCACCGCCGGAGCAAGAGAATCTTCCTTGCCCTCGCTGTGACTCCACCAACACCAAGTTCTGTTACTACAACAACTACAACTACTCCCAGCCTCGCCACTTCTGCAAGTCTTGTCGCCGGTACTGGACTCACGGCGGCACTCTCCGCGACATCCCAGTCGGCGGCGGTAGCCGGAAAAACGCCAAGCGCTCACGCACTCACCATTCTGCCGCTACTTCCTCTTCTTCCGCCGTGACATCGGTGCCGGAGCATCCCTTTCCGGCAATGGCTCCAATCGCCGGCGGTGCTATTCAAGGAGGGCCAATGCAGTTCGGCGGTGGAGTTGACGGCGACGTGAAACAGAACGTGAACGTTTGCGGGAGCTTCACTTCGTTGCTGAGCACCACCCAAGCTTCTGGCGTTGGAAACACGTGGCAGTTAGAAGGTGGCGATGGTGGCTTTGTCGGTGGTGACTGCTTCTCTTGGCCGGGATTGGCAATTTCAACACCGGGAAATGGTCTCAAGTGA 573 0.5864 MPSSDSGENRRATKPQNRAGVAPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHSAATSSSSAVTSVPEHPFPAMAPIAGGAIQGGPMQFGGGVDGDVKQNVNVCGSFTSLLSTTQASGVGNTWQLEGGDGGFVGGDCFSWPGLAISTPGNGLK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi25g00026 190 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Sebi25g00026 190 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Sebi25g00026 190 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Sebi25g00026 190 MobiDBLite consensus disorder prediction 71 107 - -
Sebi25g00026 190 MobiDBLite consensus disorder prediction 1 32 - -
Sebi25g00026 190 MobiDBLite consensus disorder prediction 89 103 - -
Sebi25g00026 190 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 102 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi25g00026 Sebi-Chr25 811029 811739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi25g00026 159 190 C2C2-Dof Transcription Factor Family AT3G50410 58.333 8.18e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi25g00026 zf-Dof 5.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi25g00026 - - cam:101488684 270.011