Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi192g00049 ATGCAGAACGGATTTGAAGAATCAACTAGTGCTGAAGTGGATGTTCCTTTGAAGGAAGTATCTGGCAAACAGACTGATCCTCAAGAAGATGCAAACATGTATAAAAGCCCTACTCTTAAACTGGTAGCCAAAGTAGTTCATAGAACAAATGAACATAGGTCTGCTAAAAGAGAAATTGATCATCAAGAAAAAGTTCTTAAGAAGCCAGACAAGGTCCTGCCATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCTAGGCATTTCTGCAAAAATTGCCAGAGATATTGGACTGCTGGGGGGACAATTAGAAATGTTCCTATTGGAGCTGCATCTGTCATCCAGACAGATTCAAACCCTGCTAGTGATAAGCATTTTTCATCTAGCAAACGTCTTGTGATTCCAGGACCTGTTATAGAAATGGGGAACGTCCCAAGTCTAAGAGAGGAAGCTCCTCTTAGTACATCCCTTGAAACTATGTTAAATCTCAAGGGCCAGACAAAAATTGAAGTGGACTCTTCTACTGTCAAAGATGATAGTGAGGAGCCTTCCAGCTCTTCTATGAGAAATGTTGAATCCAGGGAGAAGGAATATTCAGAAAATATGATAGAGCAGGTTGGTTTGACACAACACTTTAATGGTTTAATTCCTTTACATTCACTTCATTGTTATCCTGTTCCTCCATGGGCTTACCAATGGAATCCATGTTGGAATGCTATAGCTTTTAGGCCTGGTAGCATAACTTCTAGTCCTGCTTACATGGGTTCTACAACCATGGTGGCAGTTCCTGGCTTTTCCACACCAACAGTAGAATTACCAGTGGCACCTTCTTTATTTTGGGGTTGCATGCCAAGCTGGGCTGGAGAAAAGGATGAGTCTTCATTGGTTGGATCTACATTTAGTTGCATCTCATCATCACCTTCATCTTCAGTTAGCAACAGTACCTTTTCTGGTAATAGGTCCCCAACCTTAGGAAAACATTCTAGAGATGGAAGTACACCAGGTGAAGATGCAATGCAACCAAATCTTTGGGTACCTAAGACTGTAAGAGTTAATGATCCAGAAGAGGCTGCAAAGAGTTTTATATGGTCAACATTGGGAACAAAATCTGAACAGAACAAACCCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAATGCCAGTTCACATACTTTAGATGATAATCAAATTCTAAGGGCAAACCCTGCTGCTTTCTCCCGCTCTGAATCCTTTCAAGAAAGCATTTGA 1290 0.4023 MQNGFEESTSAEVDVPLKEVSGKQTDPQEDANMYKSPTLKLVAKVVHRTNEHRSAKREIDHQEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPIGAASVIQTDSNPASDKHFSSSKRLVIPGPVIEMGNVPSLREEAPLSTSLETMLNLKGQTKIEVDSSTVKDDSEEPSSSSMRNVESREKEYSENMIEQVGLTQHFNGLIPLHSLHCYPVPPWAYQWNPCWNAIAFRPGSITSSPAYMGSTTMVAVPGFSTPTVELPVAPSLFWGCMPSWAGEKDESSLVGSTFSCISSSPSSSVSNSTFSGNRSPTLGKHSRDGSTPGEDAMQPNLWVPKTVRVNDPEEAAKSFIWSTLGTKSEQNKPIMKGSVFKSFEPKSNASSHTLDDNQILRANPAAFSRSESFQESI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi192g00049 429 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Sebi192g00049 429 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Sebi192g00049 429 MobiDBLite consensus disorder prediction 181 206 - -
Sebi192g00049 429 MobiDBLite consensus disorder prediction 1 34 - -
Sebi192g00049 429 MobiDBLite consensus disorder prediction 178 206 - -
Sebi192g00049 429 MobiDBLite consensus disorder prediction 315 353 - -
Sebi192g00049 429 Pfam Dof domain, zinc finger 70 121 IPR003851 GO:0003677|GO:0006355
Sebi192g00049 429 PANTHER CYCLIC DOF FACTOR 2 19 428 IPR045174 GO:0003700|GO:0006355
Sebi192g00049 429 MobiDBLite consensus disorder prediction 315 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi192g00049 Sebi-Chr192 1228357 1229708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi192g00049 62 428 C2C2-Dof Transcription Factor Family AT5G39660 37.717 1.14e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi192g00049 zf-Dof 7.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi192g00049 - - gmx:102666857 570.081