Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi16g00046 ATGCACCAAACTACAGACCCTGCAATTAGGCTCTTCGGTCAGAAGATTCCTCTGCCCGCTGATCCTCACCTTCCCGCCGCCGCTTCTCACTCGCCGCCGGACATCCATCTCCACAAAGAAAAAGAAAAAGAAGACAGAGAAAGTGGTGATGAAACAGAACAAGAGCCACAACATGAGGATCTTCCAGGAGCTGAAAATGTAACAGAGGAAGAGGAAGAAGCTGATCCTGATGATACCCCTTCCAATGCAGAAGAGGAGACTAGAATTCAGGCATCATGGACACTAAATTCTGTTACTAACAACTACAACATCAACCAGCCACGTTATTTCTGCAAAGCTTGCCAGAGATATTGGACTGCTGGTGGCACCATGAGGAATGTTCCAGTAGGTGCAGGACGAAGAAAGAACAAGAACTCCACCTCACATTATCGCCACATCACTATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTCCTAATGGAACTCATCTTCCTACATTGAAAACCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACCTATATGTGATTCCATGACATCTGTTCTCAATCTTGGTGAGAAAAGGTTCTTAATGGCACAAGAAATGGGTTTCATGTTTCTTGCAAAAGTGGGAGGAAAAATGGTGATGACTCATCAAATTCAAGTTCAAACATCTTCTATTACTGTTTCAAGTTCCATGGAGAAAGTAGCAAAAGTACTTTCCAACAACCAATGCTACAAAACAATGGTTTCATTCCTCAAGTTCCATGCATTCCTAGTGTTCCTTGGCCTTATACTTGGAACCCTCCAGTCCTTCACCTGCTTGTGTCCTTCAGGATTCCCTTGCCATTCTATCCTGCTCCTGCTTTTTGGAACTGCAGTGTTCCATGGTTTCCCTCACATTCCCCTGCTTCAACACCAAAGGTCTCCAAGCTCAGGTCCAAATTCTCCAACTTTGGGGAAGCACTCAAGGGAAGGTGAGGTGATTACACAGGAACCTTTGCAAAAGAAGAACCATCACCAAAGCAAAGGAATGGCTGTGTTTTGGTTCCCAAAACATTAA 1071 0.4454 MHQTTDPAIRLFGQKIPLPADPHLPAAASHSPPDIHLHKEKEKEDRESGDETEQEPQHEDLPGAENVTEEEEEADPDDTPSNAEEETRIQASWTLNSVTNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAPPNGTHLPTLKTNGRVLSFGLDAPICDSMTSVLNLGEKRFLMAQEMGFMFLAKVGGKMVMTHQIQVQTSSITVSSSMEKVAKVLSNNQCYKTMVSFLKFHAFLVFLGLILGTLQSFTCLCPSGFPCHSILLLLFGTAVFHGFPHIPLLQHQRSPSSGPNSPTLGKHSREGEVITQEPLQKKNHHQSKGMAVFWFPKH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi16g00046 356 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Sebi16g00046 356 MobiDBLite consensus disorder prediction 33 64 - -
Sebi16g00046 356 MobiDBLite consensus disorder prediction 65 80 - -
Sebi16g00046 356 PANTHER CYCLIC DOF FACTOR 2 100 355 IPR045174 GO:0003700|GO:0006355
Sebi16g00046 356 MobiDBLite consensus disorder prediction 1 91 - -
Sebi16g00046 356 Pfam Dof domain, zinc finger 99 138 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi16g00046 Sebi-Chr16 559139 561215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi16g00046 1 198 C2C2-Dof Transcription Factor Family AT3G47500 41.949 1.91e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi16g00046 zf-Dof 5.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi16g00046 - - gmx:778113 240.736