Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi137g00047 ATGGATTCTTCTTCACCATCTGGGGACATGCTCACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGTCCAAGGTGTGATTCAACCCACACCAAGTTCTGCTACTACAACAATTATAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTACTGGACTAAAGGAGGGACTCTTAGGAACATCCCTGTTGGTGGAGGTTGCAGAAAGAACAAGAAAGTTTCAGCCAAGAAATCCAATGACCATTTACCTAATAATCAAAACCAACCACAACCTGGAGGACCTTCCTACCATCATCACAACCCCAAAGATCTTCAACTCTCTTTCCCAGATGTTCAATTTTCTCACCTCAGTAACTTTCTTGGGACTAATGCTGGGGCATTAGGAAACCCTAATTTCATGGACAACAAGTATAATAACAACAACATTGGTATGCTTGAGAACCCTAGGCCTATTGACTTCATGGAGAGTAAGTTGGAAGGCATAATTGGGAGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTAGTGATCATATGGGTATGGCTGTTGGGTTGGGAGATATGAATGGTCAAAATGGGTTGCCACCAAATTTTCACAATCTTTGTTCTCCTGCATTTGGTGCCATGTCCTTTGATGGTGGAAACAATAATGGAGGTTACTTAATGGACTCTTGCCAGAGACTGATGCTGCCATATGATCATGCCAATGAGGATCACAATGCCTCAATTGATGTGAAGCCAAACCCTAAACTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCAGGAAAAGAGTCATTTGGATATCTTAACGGTCCAGGATCATGGAATGGCATGATGAACGGTTATGGATCTTCCACAACAAACCCTTTGGTCTAA 921 0.4289 MDSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHLPNNQNQPQPGGPSYHHHNPKDLQLSFPDVQFSHLSNFLGTNAGALGNPNFMDNKYNNNNIGMLENPRPIDFMESKLEGIIGSSSRNFDFFGNSSDHMGMAVGLGDMNGQNGLPPNFHNLCSPAFGAMSFDGGNNNGGYLMDSCQRLMLPYDHANEDHNASIDVKPNPKLLSLEWQDQGCSDAGKESFGYLNGPGSWNGMMNGYGSSTTNPLV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi137g00047 306 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Sebi137g00047 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 171 IPR045174 GO:0003700|GO:0006355
Sebi137g00047 306 Pfam Dof domain, zinc finger 27 84 IPR003851 GO:0003677|GO:0006355
Sebi137g00047 306 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Sebi137g00047 306 MobiDBLite consensus disorder prediction 91 106 - -
Sebi137g00047 306 MobiDBLite consensus disorder prediction 75 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi137g00047 Sebi-Chr137 791924 792844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi137g00047 20 306 C2C2-Dof Transcription Factor Family AT5G62940 44.062 3.09e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi137g00047 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi137g00047 - - gmx:778107 489.189