Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02658 ATGTATCAGAACCAAGCATATTCTTCAGGATCCTATGCTGAGATGTTATCTGGGAGCCATATGTTACCTCATAGCTACAGTGATTCTGTAGGAGGACAAAATGAATTGAAGTTTATCACGGTGACTATGCAGCAGCCTCTTGATCATGGACATTCCAATGGTGCTACAAGTGATCCAACTTGCAACTCTTTTGCTGGTGCTGGAGATTCCCATGTTAATGGTATTCCAAGGACACAATTGGGACTTGTAGACAGTGAGCAAAATGTACAGTGTCAAGGCTTGTCTCTTAGCCTTGGGACAATGATGCCTTCTATGGCATCTGTCCCTACCTTTCAATATCAGTATCCCGGCACTAATTTCTCCTCACTAATGAATGCTACTATTCCAAACTTAAAGGGAAATGCATCTCTTAAAGATGATGAGGTTAGCCTACATAAGGAATTGAGAAATGCTGAATGCATGGCATCTTTATCTTCTGGAGGGTTTCACAACACTATCAAAAGGGAGGGTTTGTATAATCCACACCCCTCAATTTGCCTTAATGAAGGCCAGTCTGATCCATGCTTTCATGGATCAACAGATTTTCCCAACAATGTCCTAAACTCACAATACCTTAAGGCAGCACAGGAGTTGCTTGATGAGATAGTTAATGTCAGGAAGGCTTTGAAGCAAACAGGATTGGAAAAACAACAAAGTTTCCGTGACATTAGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTGCGAGTCAATCTATGCAAATATCTTCGGGCCCCAATGGTTCTACTGCAAACTCTTCATGTGAACTGTCACCTGCAGAACGACAGCATTTGTTGGACAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACAGACAGTATTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGATATGGTTGCTGGGTGTGGAGCAGCTGAACCATACACTGCACTTGCTTTGCGCACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCTATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTCCGCTATGTAGATCAACAGCTCAGACAACAAAAGGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTCCGTGCATGGCTTTTTGAGCATTTCCTTAATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACGGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAGGAAGAATTTGGTGATTCTGAGATGAGTAGCAGCAATCTTTTATCTGAAAATACACCCAAAGCTCCAAGAGATGATGTTCAAGTGTCTAACAATGAAAGGGAAGAGTCTCAGTCTCAGGACAAGTTAATAACTGCTGATGGTGTTCAACATGGCCAACTTCATGGGTTGAAGTTGGATCATGCCTCCTCCACTACAGAATTGGATAGAGGGATCCAAAGTAGTGATCATGGAGCAAATGCCATGGATTCTAGAATTGGGAAATTGCAGGGTGACCAACAAAGGTTTAACATGAACAATACTCCTTATTCAAGTGCACCTATGATCAACCAAAATGGTGATGGCTGCTTGATGGCTTCTACTACTCCTGCCACATATGATTTATCAGAGTTGGGTAGCTTTGCTGTGGGTGGCCATGTTTCTCTTGCATTGGAGTTAAGAAACTCAGAAAGTGATGGATTTGGGATGTCCAATGATGACATACATAAAAGACGAAATCCGACAATGGCTTCTTCCCCAGAAACTGATTTGCTAGATTATCATTTCACAGACGCAGGAAAGCAAGAGCACAAGTTTGGCAATCCTCATCTATTACACGAGTTTGTTGTCTGA 1962 0.4266 MYQNQAYSSGSYAEMLSGSHMLPHSYSDSVGGQNELKFITVTMQQPLDHGHSNGATSDPTCNSFAGAGDSHVNGIPRTQLGLVDSEQNVQCQGLSLSLGTMMPSMASVPTFQYQYPGTNFSSLMNATIPNLKGNASLKDDEVSLHKELRNAECMASLSSGGFHNTIKREGLYNPHPSICLNEGQSDPCFHGSTDFPNNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDISLDGSKDSDGKSASQSMQISSGPNGSTANSSCELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSSNLLSENTPKAPRDDVQVSNNEREESQSQDKLITADGVQHGQLHGLKLDHASSTTELDRGIQSSDHGANAMDSRIGKLQGDQQRFNMNNTPYSSAPMINQNGDGCLMASTTPATYDLSELGSFAVGGHVSLALELRNSESDGFGMSNDDIHKRRNPTMASSPETDLLDYHFTDAGKQEHKFGNPHLLHEFVV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02658 653 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 101 476 - -
Rops9g02658 653 MobiDBLite consensus disorder prediction 233 271 - -
Rops9g02658 653 Pfam Homeobox KN domain 401 440 IPR008422 GO:0003677|GO:0006355
Rops9g02658 653 MobiDBLite consensus disorder prediction 454 492 - -
Rops9g02658 653 SMART HOX_1 384 448 IPR001356 GO:0003677
Rops9g02658 653 SUPERFAMILY Homeodomain-like 385 451 IPR009057 -
Rops9g02658 653 SMART prehox3 193 343 IPR006563 -
Rops9g02658 653 ProSiteProfiles 'Homeobox' domain profile. 381 444 IPR001356 GO:0003677
Rops9g02658 653 Gene3D - 381 459 - -
Rops9g02658 653 MobiDBLite consensus disorder prediction 477 491 - -
Rops9g02658 653 MobiDBLite consensus disorder prediction 243 271 - -
Rops9g02658 653 Pfam Associated with HOX 199 342 IPR006563 -
Rops9g02658 653 MobiDBLite consensus disorder prediction 456 476 - -
Rops9g02658 653 MobiDBLite consensus disorder prediction 605 624 - -
Rops9g02658 653 Coils Coil 205 225 - -
Rops9g02658 653 CDD homeodomain 384 445 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02658 Rops-Chr9 49753057 49757536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops9g02658 POX 5.1e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02658 9 49753057 49757536 Rops9g02658 9 49753057 49757536 ECH