Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02650 ATGCTGAAATCAGGCATAGGAATTGAAGAGAGGAAGCAGTTGAAGAGGCCTGCACAAGCCAGCTCTAGAAAGGGGTGTATGAGAGGCAAAGGAGGTCCTGAGAATGCAAGTTGCACCTACAAAGGTGTGAGACAGAGAACTTGGGGAAAATGGGTTGCTGAAATCCGTGAACCCAATCGTGGTGCTAGACTCTGGCTTGGAACATTTGAGACCTCTCATGAAGCTGCTTTGGCTTATGATGCTGCAGCACGTAAGCTTTATGGTTCAGATGCTAAGCTCAATCTGCCTGAGTTCTCTGTGAATTCTCAATGCCCACCACCTTCTTCTGCTACCAACCAGATTGCACAAATGCAGCAACCTCAAATTCACCACAACAACTCAGATTTCACCAGTGTCACATCTTCTATCCTTGATACCAACATGACCCCAATAGTCTCCATGGCTTCTCATCACGTTGGTGATGGACCAATTTATTCAAGTGACTCTATTGTGTCCCTTCCATTAGAGACCAACACTGAGCCAGTGGAAAGCTACTCAAAGCCTATGGACAGTGAGGAGAAGTTCAATTCCTTTTGGGGAACAATGAATGAGCCTGTGTTTGATGGTTCCATTTGGGCAGAAGCTGCTATGTCCCTAGATTTTCCTTTGATTGCTGATGATGGCTTTTACTCAGCTGGAAATTTAGGAGAAGTGGGTGTCTGGGACTCTCTACAAACTCCATGGTGCATGTAA 732 0.4577 MLKSGIGIEERKQLKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPEFSVNSQCPPPSSATNQIAQMQQPQIHHNNSDFTSVTSSILDTNMTPIVSMASHHVGDGPIYSSDSIVSLPLETNTEPVESYSKPMDSEEKFNSFWGTMNEPVFDGSIWAEAAMSLDFPLIADDGFYSAGNLGEVGVWDSLQTPWCM* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02650 243 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Rops9g02650 243 MobiDBLite consensus disorder prediction 1 17 - -
Rops9g02650 243 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Rops9g02650 243 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Rops9g02650 243 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Rops9g02650 243 MobiDBLite consensus disorder prediction 1 34 - -
Rops9g02650 243 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Rops9g02650 243 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Rops9g02650 243 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Rops9g02650 243 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 194 - -
Rops9g02650 243 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Rops9g02650 243 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02650 Rops-Chr9 49683165 49683896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops9g02650 AP2 7.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02650 9 49683165 49683896 Rops9g02650 9 49683165 49683896 ECH
Rops9g02650 9 49683165 49683896 Rops10g02421 10 42411760 42412440 PCT