Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02641 ATGAAGATCCAGTGCGATGTGTGCAGCAAAGAAGAGGCTTCTGTGTTCTGCACCGCCGATGAAGCTGCACTTTGTGACGGCTGTGACCACCGTGTCCACCATGCCAACAAGCTAGCTTCCAAGCATCAACGCTTCTCTCTTCATCGCCCTTCTTCAAACCAATACCCTCTCTGTGATATTTGCCAGGAGAGAAGAGCTTTCATGTTTTGTCAACAAGATAGAGCGATTTTATGCAAAGAGTGTGACTTTTCAATTCATTCTGCCAACGAACTCACTCAGAAGCATGATAGGTTCCTTCTCTCTGGTGTTAAACTCTCTGTTGCTCCTAAGCTTTATTCATCAACACCCTCCAATTCAGTTTTGACCACTGCTTCTGATTCTTTCAAGTCAAAGCCTTCTTCTAACCTTTCACATCCACCTTTGATCGCAAAGACCAATCCTTCATCTGCATCAGCAGCAGCACTACCCCTCTCTTCTACCACCACCCTCAACAAGGTGGCTATGAAAGGAACAGATTCAACAAGTGCAAGTAGCATATCTGAGTACTTGATAGAGACTCTACCTGGTTGGCAGGTTGAAGACCTTCTTGATTCATATTCTGTTCCCTTTGGTTTTTGTAAGAGTGATGACATGTTGCCAATGTTTGATGCTGGTATTGAAGGGAATCTTGGTTCCATGGGGATCTGGGTTCCTCAAGCACCACCTCCACTATATTCTTCACAAATGGATGGGGTGATTGGGCAAAATGAGGCCACCAACAACATCAAAGGAAGCAGCAGATCAAGGTGGAGAGATGATAATAATTTCACAGTTCCACAGATTAGTCCTGACTCCAATTCCAAGAGACCCAGATATCTATGGTAG 864 0.4468 MKIQCDVCSKEEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLHRPSSNQYPLCDICQERRAFMFCQQDRAILCKECDFSIHSANELTQKHDRFLLSGVKLSVAPKLYSSTPSNSVLTTASDSFKSKPSSNLSHPPLIAKTNPSSASAAALPLSSTTTLNKVAMKGTDSTSASSISEYLIETLPGWQVEDLLDSYSVPFGFCKSDDMLPMFDAGIEGNLGSMGIWVPQAPPPLYSSQMDGVIGQNEATNNIKGSSRSRWRDDNNFTVPQISPDSNSKRPRYLW* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02641 287 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops9g02641 287 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Rops9g02641 287 MobiDBLite consensus disorder prediction 251 280 - -
Rops9g02641 287 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 279 - -
Rops9g02641 287 CDD Bbox1_BBX-like 5 47 - -
Rops9g02641 287 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Rops9g02641 287 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270
Rops9g02641 287 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops9g02641 287 SMART bboxneu5 53 100 IPR000315 GO:0008270
Rops9g02641 287 CDD Bbox1_BBX-like 57 100 - -
Rops9g02641 287 Gene3D Classic Zinc Finger 1 94 - -
Rops9g02641 287 FunFam B-box zinc finger protein 21 1 98 - -
Rops9g02641 287 MobiDBLite consensus disorder prediction 251 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02641 Rops-Chr9 49530400 49531856 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Rops9g02641 zf-B_box 3.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02641 9 49530400 49531856 Rops10g02436 10 42620734 42622042 PCT