Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02629 ATGGGTGCTGATATCTCCGACGATGGATTGAAGAAATTGGAATATTTATCGTTGGTGTCGAAGGTTTGTACAGAATTGGAATCGCACACCGGAACCGGCGACAAGGTTCTGGCTGAATTCATCACCGAATTGGGTCATTCGTCGGATATTGTTGAAGAATTCGACGCGAAGTTGAAGGAAAACGGTGCTGAGATGCCGGATTACTTTGTCAGAACCCTCCTCACTATAATCCACGCGATTCTACCTCCAAAACCTAAGAAGGAGAAAGAGAAAGATAAAGAAAGCGCCACCACGAAGACGAAGTTCAAAGCTTTAGCAATTGCTGACAACAGGGACAGAGCCAAGGATCTTCAAAAGGAGATTGAAGCAGAAGCAAAGCAAAAACAAAGCGATAAACAACTAGCAGATGAAGATGAAGGTAACAGAGATAGAGATAGAAGAGACAGAAGAAGAGATAGATATGAAAGAGAAGATAGGTATAGAGAAAGAGATTGTGATGATGAAAGAAGGGATTCTAGAAGAGGAAGAGATAGAGATAGGGAGAGAGACAGGGAGAGAGATAGAGATAGGGATAGAGACAGGGAGAGAGATAGAGAGAGATATGAGAGGCGGGGAAGAGATATGTATGAAGAGGATGAAAATATTAGAGAGAATGGTGAGAGGCGGGGAAGAGATATGTATGAAGAGGATGAAAATAGAAGAGAGAATGGTGAGAGGAAAGGACGTAGAGATTCCAGAAATGGGTCTGAACCTGAGTTGTATAATGTTTATAAAGGAAGGGTTTCAAGGGTTATGGATACTGGGTGTTTTGTTCAGTTGGCTGATTTTAGAGGGAAGGAGGGTTTGGTGCATGTTTCTCAGATTGCTACTAGGAGGATTACTAATGCTAAGGATGTTGTGAAGAGGGATCAAGAGGTTTATGTGAAGGTGATCTCAGTTTCTGGTCAGAAGTTGAGTCTTTCTATGAGGGATGTTGATCAACATTCTGGGAAAGATCTTCTTCCTTTGAAGAAGAGTTCCGAGGATGATGCTTTGAGGATGAATCCGCAGGATTCGAAGGATGGGCCGGTTGCAAGGACGGGGCTTTCGGGTATCAGGATTGTGGAGGAGGCTGATGTTGGTTCTTCGAGGAGGCCTTTGAAGAGGATGAGCTCTCCGGAGAGATGGGAAGCAAAACAGTTGATTGCTTCTGGTGTTTTGAGTGTTTCGGAGTATCCAACTTATGATGAGGAGGGAGATGGATTGATGTATCAAGAGGAAGGTGCTGAGGAAGAGCTTGAGATTGAGTTGAATGACGATGAACCTGCCTTCTTGCAAGGGCAGAGTAGATACTCAATGGATATGTCTCCTGTTAAGATTTTTAAGAATCCAGAAGGTTCTCTTGGTCGTGCTGCTGCACTCCAGTCTGCACTTATAAAGGAGCGTAGGGAAGTTCGAGAACAACAACAAAGAACGATGCTTGATTCAATTCCAAAGGATCTCAATCGTCCTTGGGAAGATCCTATGCCAGAGACAGGTGAAAGGCATCTTGCACAGGAGCTGAGGGGTGTTGGTTTAGCAGCCTATGATATGCCAGAATGGAAAAAGGATGCCTACGGGAAAACTATTACTTTTGGACAAAGGTCAAAGCTTTCTATTCAGGAACAGAGGCAGAGTTTGCCAATTTACAAGTTAAAAAAGGAACTGATTCAAGCTGTCCATGAGAACCAAGTATTGGTGGTTATTGGTGAAACAGGTTCGGGTAAGACTACTCAGGTCACACAGTATCTTGCTGAAGCGGGTTACACCACGAAAGGTAAAATTGGATGTACTCAACCCCGAAGGGTGGCTGCAATGTCAGTTGCAAAGAGAGTTGCAGAAGAGTTTGGTTGTAGATTGGGAGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCCGATACTGTAATCAAGTACATGACTGATGGTATGCTTCTTAGGGAAATATTGGTTGATGAGAATCTGTCACAATATTCAGTTATAATGCTTGATGAAGCCCATGAAAGAACTATTCATACTGATGTTCTTTTTGGACTGCTGAAGCAGCTAGTGAAGCGTAGACCTGAATTGCGATTGATTGTCACATCTGCTACTTTGGATGCTGAGAAGTTTTCAGGATATTTCTTTAACTGTAACATCTTCACAATTCCTGGGAGAACTTTTCCTGTGGAGATACTTTATACTAAACAACCAGAGAGTGATTACTTAGATGCATCTTTAATCACTGTCCTACAGATCCACTTGACAGAACCTGAAGGAGATATTCTTCTCTTCTTGACTGGTCAAGAGGAGATTGATTTTGCTTGCCAGTCTCTCTATGAGAGAATGAAGGGATTAGGTAAGAATGTCCCAGAGCTGATCATTTTACCGGTTTATAGTGCCCTTCCTAGTGAAATGCAATCTAGGATATTTGATCCTGCTCCTCCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATTTTATGTGATTGATCCGGGATTTGCTAAGCAAAATGTTTATAACCCAAAGCAAGGTCTTGATTTTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCTGGACGTGCAGGGCGTACTGGACCTGGTAAGTGTTATCGGCTCTATACTGAGAGTGCATATAGGAATGAGATGTCTCCTACTTCAATTCCAGAGATTCAAAGGATAAATCTGGGGATGACTACTCTTAATATGAAAGCTATGGGGATAAATGATCTTCTGTCCTTTGATTTTATGGATCCACCATCACCCCAAGCACTTATTTCCGCCATGGAGCAGCTTTATAGTCTTGGAGCATTGGATGAAGAGGGCCTTCTAACCAAATTGGGTAGGAAAATGGCAGAATTTCCTTTGGATCCACCATTGTCCAAGATGCTACTTGCCAGTGTAGACCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAGACTGGCAATATTTTTTACAGGCCCAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCGGAGGGTGACCATCTTACACTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAATTTTTCAGGGCCCTGGTGTTTTGAGAACTTTGTTCAATCTCGATCATTGAGAAGAGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTACAAATTGGATGTTGTAAGTGCTGGAAAAAACTTCGCCAAGATCAGGAAGGCTATCACTGCAGGATTCTTTTTTCATGGAGCTAGAAAGGACCCCCAAGAAGGTTACAGAACTCTAGTTGAGAACCAGCCTGTATATATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATATACCATGAGCTTGTCATGACAACAAAGGAATATATGCGTGAGGTCACTGTCATAGATCCCAAATGGCTTGTTGAGCTGGCTCCAAGATTCTTCAAAGTGGCAGATCCCACAAAGATGAGCAAGCGAAAGCGTCAAGAGCGTATAGAACCACTTTATGATAGATACCATGAACCAAATTCATGGCGTTTGAGTAAACGCCGTGCATGA 3621 0.4303 MGADISDDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGHSSDIVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKPKKEKEKDKESATTKTKFKALAIADNRDRAKDLQKEIEAEAKQKQSDKQLADEDEGNRDRDRRDRRRDRYEREDRYRERDCDDERRDSRRGRDRDRERDRERDRDRDRDRERDRERYERRGRDMYEEDENIRENGERRGRDMYEEDENRRENGERKGRRDSRNGSEPELYNVYKGRVSRVMDTGCFVQLADFRGKEGLVHVSQIATRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKSSEDDALRMNPQDSKDGPVARTGLSGIRIVEEADVGSSRRPLKRMSSPERWEAKQLIASGVLSVSEYPTYDEEGDGLMYQEEGAEEELEIELNDDEPAFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLAAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDFLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTTLNMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFAKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02629 1206 Gene3D - 248 334 IPR012340 -
Rops9g02629 1206 CDD SF2_C_RHA 730 891 - -
Rops9g02629 1206 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 668 677 IPR002464 -
Rops9g02629 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 1076 IPR027417 -
Rops9g02629 1206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 563 726 IPR014001 -
Rops9g02629 1206 PANTHER ATP-DEPENDENT RNA HELICASE 483 1168 - -
Rops9g02629 1206 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 519 728 - -
Rops9g02629 1206 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 928 1027 - -
Rops9g02629 1206 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1091 1166 IPR011709 -
Rops9g02629 1206 Pfam DEAD/DEAH box helicase 559 709 IPR011545 GO:0003676|GO:0005524
Rops9g02629 1206 MobiDBLite consensus disorder prediction 124 201 - -
Rops9g02629 1206 MobiDBLite consensus disorder prediction 214 251 - -
Rops9g02629 1206 ProSiteProfiles S1 domain profile. 254 323 IPR003029 GO:0003676
Rops9g02629 1206 SMART helicmild6 779 883 IPR001650 -
Rops9g02629 1206 SUPERFAMILY Nucleic acid-binding proteins 253 330 IPR012340 -
Rops9g02629 1206 SMART S1_6 252 323 IPR022967 -
Rops9g02629 1206 Coils Coil 464 484 - -
Rops9g02629 1206 FunFam ATP-dependent RNA helicase DHX8 249 334 - -
Rops9g02629 1206 Gene3D - 729 903 IPR027417 -
Rops9g02629 1206 Gene3D - 525 728 IPR027417 -
Rops9g02629 1206 Coils Coil 107 138 - -
Rops9g02629 1206 SMART ha2_5 944 1034 IPR007502 GO:0004386
Rops9g02629 1206 CDD S1_DHX8_helicase 254 330 - -
Rops9g02629 1206 CDD GH2-like_DHX8 13 80 - -
Rops9g02629 1206 SMART ultradead3 551 735 IPR014001 -
Rops9g02629 1206 MobiDBLite consensus disorder prediction 84 109 - -
Rops9g02629 1206 Gene3D - 928 1027 - -
Rops9g02629 1206 MobiDBLite consensus disorder prediction 214 249 - -
Rops9g02629 1206 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 729 903 - -
Rops9g02629 1206 Pfam S1 RNA binding domain 252 321 IPR003029 GO:0003676
Rops9g02629 1206 MobiDBLite consensus disorder prediction 322 361 - -
Rops9g02629 1206 Pfam Helicase conserved C-terminal domain 753 883 IPR001650 -
Rops9g02629 1206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 751 924 IPR001650 -
Rops9g02629 1206 CDD DEXHc_DHX8 548 726 IPR044762 GO:0000398|GO:0003724|GO:0005524
Rops9g02629 1206 MobiDBLite consensus disorder prediction 324 349 - -
Rops9g02629 1206 Pfam Helicase associated domain (HA2) 945 1033 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02629 Rops-Chr9 49319376 49325344 Dispersed/Transposed