Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02626 ATGATGGCTTCCGTAGAAGAAAAGATTAAAACTGGAGGAGTTGGAGGAGGATTAGTTGTTGGGGGTCAAACTCAAACTCAAACTCTAGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTGTGGTGTAAGAAAGACTTTAAATTCAGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTATCGTTGCCTCAGGTGGGGAGTCTCGTGTATTACTTCCCTCAGGGACATAGTGAACAGGTGGCAGCTTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCCAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTGCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAACCACTGAATTCTGAAAAAGAAGTCTTCCCTATATCTGAGTTTGGGGTAAAGCACAGTAAACATCCAAGTGAATTTTTCTGCAAAACTTTGACTGCTAGTGACACAAGCACACATGGTGGCTTTTCTGTTCCACGCAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACAATTCAACCACCAACCCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTCGACATATATACCGGGGTCAGCCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGAGAGTTGGTGTCAGGCGTGTTAATCGTCAACAGACAACACTGCCATCATCAGTGCTTTCTGCTGATAGTATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATAGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGTCCTTCAGAATTTGTTATTCCACTAGCTAAATACAGAAAAGCTGTATATGGGACTCAGCTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGCACAATTGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAACCAGGATGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTAAAACGGCCATTACAATCTGGACTTTTGGAAAATGAATGGGGACCTTTGTTAAGAAGACCTTTTATAAAAGTTCCTGAAAATGGAACGATGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAGCAACTGATGAAAATGCTTTTTAAACCCCAAGTTATTAACAATAATGGAGCCTTTTTATCTGCCATGCAACAAGAATTTGCTGCTACAAGAGGTCCCTTACAAGAGATGAAGACCACACTGGCAACAGAAAACCCAAAAGTTCATCTTGCCAACATGCATTCTCATTCTGTCCCTGACCAACCTAATGCCTTAAACATGCATTCACTGTTGAAAAGTGATCAACCTGAAAATTTGCATGCTCAGGCCAAAATGGATAATCATCTGCCGTCTGGAACGGTTACTGATAAGCCAAAAATAGAATCTGAGGTTTTGCCGGATAATATGTTTGACTTCCCTACCATGATGGAAGGATGCAACATTGAAAAAGTGGCAGCAAATCCTGTTAACCCGCAAAGCCTAGCAAGTCAATTGACATTCCTTAATCAAAACCAAAATCCATTACTCAATCAATCTAGTCCTTGGTCAATGCAGCCTCAGTTAGAATCATTGATGTCCCATCCTCAACTGATTGATATGGCTCAATCTGATTTTGCTATGGTAAATGGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGTGAATTCTTCTTGCCAATCTTTTGCTGGGCAAAATAGATCAACTGTGCCTTTATCAGATATGCAAGAACATACCTCAATTCAACCTCAAGCAGTGAATCCCACTTTACCTTCAATGAACCAAGAAGTGTGGGATCATGTCAAGAATTTGAAGTTTTTATCTCAAACTGATCAGCTAACATCCATCTCTCAGTCTGGGCCATATGGCCTCAATGGTATATCTAATGCAAACAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAATAGTGTAAGTACCACCATGGTTGATCCTTCTACTTCAAGTACCATTTTGGATGAGTTTTGCACAATAAAGGACAAGGATTTTCAGCACAACCCACCACAAGATTGCATGGTGGGCAACTTAAGTTCAAGTCAGGATGGCCAGTCTCAGATAACCTCAGCAAGTCTAGCAGAATCACATGCCTTTTCTCTGAAAGACATCGCTGACAACTCAGGTGGTACATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTACAGAATAACTCATGGCAGCAAGTAGCTGCACCTATCAGAACCTACACAAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGATCCGCGCAATCGAATGCATGTTTGGACTCGATGGTCTTCTAAATGACACCAAAGGTTCCGGATGGAAATTGGTATATGTAGATTATGAGCATGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGGTGTGTCCGGTGTATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGTATGAAGCTTCTAAACAGTGGAGCATTGCAAGGGATCGATGTTTGA 2823 0.4176 MMASVEEKIKTGGVGGGLVVGGQTQTQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEVFPISEFGVKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGPLLRRPFIKVPENGTMELSNSMPNLYQEQLMKMLFKPQVINNNGAFLSAMQQEFAATRGPLQEMKTTLATENPKVHLANMHSHSVPDQPNALNMHSLLKSDQPENLHAQAKMDNHLPSGTVTDKPKIESEVLPDNMFDFPTMMEGCNIEKVAANPVNPQSLASQLTFLNQNQNPLLNQSSPWSMQPQLESLMSHPQLIDMAQSDFAMVNGLLPQLDIDEWMVNSSCQSFAGQNRSTVPLSDMQEHTSIQPQAVNPTLPSMNQEVWDHVKNLKFLSQTDQLTSISQSGPYGLNGISNANNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPSTSSTILDEFCTIKDKDFQHNPPQDCMVGNLSSSQDGQSQITSASLAESHAFSLKDIADNSGGTSSSHVDFDESSFLQNNSWQQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYEHDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGIDV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02626 940 Pfam AUX/IAA family 831 921 IPR033389 -
Rops9g02626 940 Gene3D - 830 923 - -
Rops9g02626 940 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Rops9g02626 940 FunFam Auxin response factor 829 923 - -
Rops9g02626 940 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Rops9g02626 940 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 924 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops9g02626 940 SUPERFAMILY DNA-binding pseudobarrel domain 145 284 IPR015300 -
Rops9g02626 940 FunFam Auxin response factor 319 391 - -
Rops9g02626 940 ProSiteProfiles PB1 domain profile. 834 918 IPR000270 GO:0005515
Rops9g02626 940 SMART B3_2 155 257 IPR003340 GO:0003677
Rops9g02626 940 SUPERFAMILY CAD & PB1 domains 838 913 - -
Rops9g02626 940 Gene3D - 153 256 IPR015300 -
Rops9g02626 940 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops9g02626 940 Gene3D - 319 391 - -
Rops9g02626 940 FunFam Auxin response factor 153 257 - -
Rops9g02626 940 CDD B3_DNA 154 255 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02626 Rops-Chr9 49251754 49257603 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops9g02626 AUX_IAA 9.2e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02626 9 49251754 49257603 Rops9g02626 9 49251754 49257603 ECH