Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02622 ATGGGAGTCCCTGCGTTCTATCGATGGTTAGCGGAGAAATATCCGATGGTGGTTGTGGATGTAATTGAAGAAGAACCGGTGGTTATCGAAGGTGTTCAAATCCCCGTTGATACGAGTAAGAAAAACCCTAACAATATCGAATACGATAATCTCTACCTCGACATGAACGGTATCATTCATCCTTGCTTTCATCCCGAAGATAGGCCATCACCGACCTCTTTCGAGGAGGTTTTTGAGTGCATGTTTGATTACATTGATAGGCTATTTGTTATGGTGCGGCCTCGGAAGCTGCTCTATATGGCTATTGATGGTGTTGCACCGAGGGCTAAAATGAACCAACAACGGTCTAGGCGGTTTAGGGCAGCCAAAGATGCAGCTGATGCGGCTGCTGAAGAAGGAAGGTTAAGGGAGGAATTTGAGAGGGAGGGCAGAAAGCTCCCTCCTAAAGAAGGCTCGCAGGTTTTTGATTCCAATGTCATCACACCTGGGACCGAATTTATGGATGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGATTGAACAATGATCCTGGTTGGAGAAATATTAAGGTTATCCTTTCTGATGCAAATGTTCCCGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTCCAGAGAAATCTTAAAGGTTATGATCCAAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGCTGGCTCTGGCTACCCATGAAATCCATTTTTCAATTCTTAGAGAGATTGTATTTACTCCTGGACAAGACAAATGCTTTCTCTGTGGTCAGATGGGTCATATGGCTGCAGATTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGATGCTATTGTGGCCAAAAAACCCTTCCAGTTCCTAAACATTTGGGTTCTGAGGGAATATCTGGAGTATGAGATGATGAGAATACCTAATCCTCCTTTGAAGATTGATTTTGAATGCATTGTCGATGATTTTATCTTTATATGCTTTTTTGTTGGCAATGATTTCCTGCCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATTAACTTGCTGATGGCAGTATACAAGAAGGAATTTAGGGCAATGGGTGGTTATTTAACCAATGGAAGCAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAAGCTGTCGGATCTTATGAAGATCAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGGCAAGCAGAAAGAATAAAGCGTCAGAAGGCACAAGCAAGAGGAGATGATGCTGAGCCTCAAGTTCAACCTGAGTCTCTCGTTGCAGTTTCACAATTCCGTGGATCTCGTCTTGCATCAGCTCCAACGCCTTCACCATTTCAACAATCTGGGCATTATGATCCTCACATGTCTATGTCAGTTAAAGACAACAAAGAAGCCTTTGAGAGGCCCCATAAAGCCGCTAGGTTATCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAGTAGTCTTGAAACAGAAGTTCAAGAGAACAAAGATGAATTGAAAACAAAACTGAAGGAGATAATTCGTGAGAAATCTGATGTCTTCAACTCAAAGAATGCTAAAGAGGACAAGATTAAGTTGGGTGCACCAGGCTGGAAAGAAAGGTATTACGAGGAAAAATTTTCTGCTGAAACTCCGGAGGAACTTGAAATTATACGAAAAGATGTCGTCTTGAAATATACTGAAGGTCTATGTTGGGTGATGCACTATTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCATCTGATCTCAAGGGCCTTGGTGAGCTTGATATTAGGTTTGAACTAGGTACCCCGTTCAAACCATTTGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCGTATAGGAAACTTATGACTGATCCAAACTCCCCAATAATTGATTTTTATCCAATTGACTTTGAAGTGGACATGAATGGGAAACGCTATGCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGCACGTCTTCTGGCAGAAGTTCGGAAAATTGAAAACTTGTTAACACCAGAGGAAGCGCGACGAAATGCCATAATGTTCGACTTGCTTTTTGTGAATTCTTGTCATCCTCTCTCTGCATGCATAAGTACACTTGACAACAAATGTAGAAACATGTCAAACAATGAACGTGCTGAGGTCAAGGAAAAAATCAATCCCAAAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACTTGTCCTTATGCGGTGGAGAACCTTGCCCCCCAATCTTCAGGTCTCCTATTGCAAGCATGGAAGATATCATGGACAACCATGTCATATGTGCAATATATAGACTCCCAGATGCGCATAAACACATTACCCAACCACCTCCGGGAGTTAAATTTCCGAAAAAGATTGTGACAATTGGGGATCTAAAACCTGAACCTGTTTTATGGCATGAAGATTCCGGTAGGAGATATCAAGAAAATGGGAGGAAAAATCCTCCGGGATCTATTTCTGGTCGGGAGCTTGGAGAGGCAGCACACAGGCTCGTGGTCAATTCCTTACAGGTCAAGGTTGATGCTAATGGATACTGTCGTCCCATTAATAGACCTCCTGTATCTTATGCTGCACCAATGGGTCATCGGCAGCCATTGCCTTCCTATAATTATGAATCTCGCCCGGGTTACGCTGCCATGCCACCTTTATCAGCTCCTCCACTCCAAGGCCAACCACGGTTTGCTCCTTACCCTGCTGTCCCTACTCCGCAGTATGGTTATAACCAACCATACTCACCACCGACGATGTATAATCCTCATCATCAATCAAATTCTTTTGAAAGAAATGATCATCAACATCCCAGATCACATCCTTATGAAAGAAATGATCATCAACATCCCAGATCACATCCTTATGAAAGAAATAACCATCATGGTAGTGGGGGAAGTGCAAGACATGGATATCCGCCATCAGGAAATCATCACAATCCCAGGCTTATGAATACGCAAGATGCATTTGCTAGTCATCATCACGAAGTCGGTCACCCCAGCCAAAACTTCCAACCCTTCAGAGCTTCTCATCAGAATTGGAACCCACGGAATAACCCGGGTGGCCACAGGGATTATGGTCAACATTCAGCCAATCAATTTTCTATGTTAGATAAAAGAGGAAACAGGAAGCCTATGCCACCACCTGGTTATAGTCGCAAATAG 3261 0.4299 MGVPAFYRWLAEKYPMVVVDVIEEEPVVIEGVQIPVDTSKKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEGRLREEFEREGRKLPPKEGSQVFDSNVITPGTEFMDVLSIALQYYVHLRLNNDPGWRNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREIVFTPGQDKCFLCGQMGHMAADCEGKAKRKAGEFDEKGDAIVAKKPFQFLNIWVLREYLEYEMMRIPNPPLKIDFECIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRAMGGYLTNGSKPNLSRVEHFIQAVGSYEDQIFQKRARLHQRQAERIKRQKAQARGDDAEPQVQPESLVAVSQFRGSRLASAPTPSPFQQSGHYDPHMSMSVKDNKEAFERPHKAARLSSGATVAAAIVEAESSLETEVQENKDELKTKLKEIIREKSDVFNSKNAKEDKIKLGAPGWKERYYEEKFSAETPEELEIIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGELDIRFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPNSPIIDFYPIDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVRKIENLLTPEEARRNAIMFDLLFVNSCHPLSACISTLDNKCRNMSNNERAEVKEKINPKERDTCSGGMNGYLSLCGGEPCPPIFRSPIASMEDIMDNHVICAIYRLPDAHKHITQPPPGVKFPKKIVTIGDLKPEPVLWHEDSGRRYQENGRKNPPGSISGRELGEAAHRLVVNSLQVKVDANGYCRPINRPPVSYAAPMGHRQPLPSYNYESRPGYAAMPPLSAPPLQGQPRFAPYPAVPTPQYGYNQPYSPPTMYNPHHQSNSFERNDHQHPRSHPYERNDHQHPRSHPYERNNHHGSGGSARHGYPPSGNHHNPRLMNTQDAFASHHHEVGHPSQNFQPFRASHQNWNPRNNPGGHRDYGQHSANQFSMLDKRGNRKPMPPPGYSRK* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02622 1086 MobiDBLite consensus disorder prediction 941 959 - -
Rops9g02622 1086 PANTHER 5'->3' EXORIBONUCLEASE 1 1015 IPR027073 -
Rops9g02622 1086 MobiDBLite consensus disorder prediction 918 935 - -
Rops9g02622 1086 MobiDBLite consensus disorder prediction 450 470 - -
Rops9g02622 1086 FunFam 5'-3' exoribonuclease 149 373 - -
Rops9g02622 1086 MobiDBLite consensus disorder prediction 960 991 - -
Rops9g02622 1086 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Rops9g02622 1086 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Rops9g02622 1086 MobiDBLite consensus disorder prediction 130 150 - -
Rops9g02622 1086 MobiDBLite consensus disorder prediction 450 467 - -
Rops9g02622 1086 FunFam 5'-3' exoribonuclease 1 136 - -
Rops9g02622 1086 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Rops9g02622 1086 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Rops9g02622 1086 MobiDBLite consensus disorder prediction 918 1086 - -
Rops9g02622 1086 Coils Coil 408 428 - -
Rops9g02622 1086 PIRSF Exonuclease_Xrn2 1 1039 IPR017151 GO:0004534|GO:0005634|GO:0006139
Rops9g02622 1086 MobiDBLite consensus disorder prediction 130 149 - -
Rops9g02622 1086 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Rops9g02622 1086 Coils Coil 507 527 - -
Rops9g02622 1086 CDD PIN_XRN1-2-like 51 312 - -
Rops9g02622 1086 Gene3D - 147 379 - -
Rops9g02622 1086 Gene3D - 1 131 - -
Rops9g02622 1086 FunFam 5'-3' exoribonuclease 613 713 - -
Rops9g02622 1086 MobiDBLite consensus disorder prediction 1035 1069 - -
Rops9g02622 1086 Pfam Xrn1 helical domain 325 827 IPR041412 -
Rops9g02622 1086 Gene3D - 616 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02622 Rops-Chr9 49114943 49126831 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02622 9 49114943 49126831 Rops9g02622 9 49114943 49126831 ECH