Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02451 ATGGATGATTCTTCAACAGTAGGTGAAAACACCAAGACTTGTCCCCGTGGTCACTGGAGACCGGCTGAGGATGAAAAGCTCCAGCAACTTGTTGAACAATATGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAACTAGATCCCAGGATCAACAGAAGGCCATTTACAGAAGATGAAGAAGAGAGGCTACTTGCAGCTCACCGTATTCACGGTAACAAATGGGCACTCATAGCAAGGCTCTTCCCAGGTCGAACTGATAATGCTGTGAAGAATCACTGGCATATTATAATGGCACGAAAACAAAGGGAACAATCAAAGCTATGTGGGAAGAGAAGCTTCCAAGATTTTTATATCGACTCCTCATCTTCTAATATTGGTTTTCCCCATAAAGGAACAACAAGAACTCATGAACTATTATTTAGCTCGAGAATTGGGTTAGAGAATGCAAGACTCTTTGACTTCAGAAACCTCTATAATAAAGAAAAGATAGTTGCAGCAGCAAATTCTAATTCCAGTTCTTTGGCCTATTGGAATTTTGGGTCCTTCACAGATAGTTCTCCTCGTGTGGCTGATTCATCATTTAGGAAAGAAGGGAGAGATAATTTCAGTAATTCTTGCTCTAAGAATGTTTATCTTTCAGAAAGCTCAAAAATCTCAGATAGATTTCTTCAGAGAATTTATCCTAATACTACATCCTTCGGAAGCTTTCGAGGTTCCAACATATTCACGCTTCCAAGTCATTTTGGAAACCTTGGTTCTGCTAATGATGGAAGGATAAAAAGGGACTTGATGAGTTTATGTGATAACTCATCAACATCTACAAAGTTGAGCACTTCTTCCACAGAGCAAGAGCAAGAGCAAGCACATGAGTCCAATAATATTGAACGGAATGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCACGATGA 990 0.4 MDDSSTVGENTKTCPRGHWRPAEDEKLQQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHIIMARKQREQSKLCGKRSFQDFYIDSSSSNIGFPHKGTTRTHELLFSSRIGLENARLFDFRNLYNKEKIVAAANSNSSSLAYWNFGSFTDSSPRVADSSFRKEGRDNFSNSCSKNVYLSESSKISDRFLQRIYPNTTSFGSFRGSNIFTLPSHFGNLGSANDGRIKRDLMSLCDNSSTSTKLSTSSTEQEQEQAHESNNIERNEVPFIDFLGVGVSSSR* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02451 329 Gene3D - 16 67 - -
Rops9g02451 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops9g02451 329 Pfam Myb-like DNA-binding domain 19 79 - -
Rops9g02451 329 SMART sant 67 115 IPR001005 -
Rops9g02451 329 SMART sant 15 64 IPR001005 -
Rops9g02451 329 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Rops9g02451 329 MobiDBLite consensus disorder prediction 286 303 - -
Rops9g02451 329 FunFam MYB transcription factor 69 138 - -
Rops9g02451 329 PANTHER MYB PROTEIN-RELATED 16 302 - -
Rops9g02451 329 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Rops9g02451 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Rops9g02451 329 CDD SANT 70 110 IPR001005 -
Rops9g02451 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops9g02451 329 FunFam MYB transcription factor 16 67 - -
Rops9g02451 329 Gene3D - 70 129 - -
Rops9g02451 329 CDD SANT 19 60 IPR001005 -
Rops9g02451 329 MobiDBLite consensus disorder prediction 286 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02451 Rops-Chr9 45448628 45458897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02451 14 123 MYB Transcription Factor Family AT1G17950 81.818 3.27e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02451 Myb_DNA-bind_6 9.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02451 9 45448628 45458897 Rops9g02451 9 45448628 45458897 ECH
Rops10g00999 10 21460005 21461312 Rops9g02451 9 45448628 45458897 PCT