Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02338 ATGCCATTCAAGAGTATTTTGCGTGAGCTCAAGGAGATGGGGGAGGGTATTGGCAACATGTATAGAAGAGGGGCTGAAACCAAGCATATGCATCGCCATGGAAAATCTCACATTGCACCAGAATGTTCCTCACCAGCATCTTCATCTTCATCATCATCATCACAGAGCCGGTGGGCTAACTTACCTCCTGAGTTGCTATTAGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCATGGCCTGCCCGTAGAGCACTTGTAGCATGTGCCTCAGTTTGTAGGTTGTGGAGGGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGACAATCCAATCCAGTGTTTTATTAAGAGAGAAAGGGTGACATCAACATATTGCTTATATCTCGGTCTTAGCCCAGCTCTTTCTGGTGATATGAGCAAACTGCTATTGGCAGCAAAGAAGATCAGAAGGGCAACATGTACAGAATTTTTAATATCATTGGCTGCGGATGATTTCTCTCGCACTAGCAATACTTACATTGGAAAGCTGAGGTCTAATTTTCTGGGCACCAAGTTTATGATCTTGGATGGTCAGCCTCCACATGATTCTTCACTTCCATTGAATTGCAAGTTACAACAAAGAGTCCACCTGAAGCAGGTACTTCCAAAGGTTGCTGCTGCTAACTATAAAGTGGCTACAGTATCTTATGAACTCAATGTTCTACGTACAAGAGGTCCAAGGAGAATGCGGTGTACCATGCATTTAATCCCCATGTCTTCAATCCAAGAAGGAGGAACTGCACCTACTCCTTTGAAGTTTACCAATTGCCTCAATGAGCATGTATCTACCACTACAATGCCCATTTCAAATGGAAAGAAGCCAGAAGTTGACTTTGGCTCAAGTGGCACTGGCAATATTCCAGAATCAACCCAGCATGCAAGGGAACCACTGATTTTGAAAAACAAAGCTCCCAGATGGCATGAACAATTGCAATGTTGGTGCTTGAATTTCAAGGGAAGGGTTACAGTGGCTTCTGTGAAGAACTTTCAGCTTGTAGCAGCTGCAGAACCTTCCCAAAATGTTTCAGCAGCAGAACAAGAGAAAGTGATACTACAATTTGGGAAGATCGGGAAGGATATATTCACCATGGACTACCGATATCCCCTCTCTGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1263 0.4394 MPFKSILRELKEMGEGIGNMYRRGAETKHMHRHGKSHIAPECSSPASSSSSSSSQSRWANLPPELLLDIIQRVEASETSWPARRALVACASVCRLWREITKDVVKTPEQCGWLTFPISLKQPGPRDNPIQCFIKRERVTSTYCLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLAADDFSRTSNTYIGKLRSNFLGTKFMILDGQPPHDSSLPLNCKLQQRVHLKQVLPKVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPMSSIQEGGTAPTPLKFTNCLNEHVSTTTMPISNGKKPEVDFGSSGTGNIPESTQHAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02338 420 CDD F-box_AtTLP-like 58 102 - -
Rops9g02338 420 Gene3D - 51 104 - -
Rops9g02338 420 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Rops9g02338 420 MobiDBLite consensus disorder prediction 41 57 - -
Rops9g02338 420 Pfam F-box domain 58 105 IPR001810 GO:0005515
Rops9g02338 420 SUPERFAMILY F-box domain 46 102 IPR036047 GO:0005515
Rops9g02338 420 SUPERFAMILY Tubby C-terminal domain-like 107 420 IPR025659 -
Rops9g02338 420 Gene3D Tubby Protein; Chain A 116 420 IPR025659 -
Rops9g02338 420 MobiDBLite consensus disorder prediction 26 57 - -
Rops9g02338 420 PANTHER TUBBY-RELATED 41 418 - -
Rops9g02338 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Rops9g02338 420 Pfam Tub family 119 415 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Rops9g02338 420 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Rops9g02338 420 FunFam Tubby-like F-box protein 115 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02338 Rops-Chr9 42894460 42897483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops9g02338 Tub 6e-106 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02338 9 42894460 42897483 Rops9g02338 9 42894460 42897483 ECH