Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02324 ATGGCCTCAAGCTCAGCTTGGACAACAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTATGACAAGGACACCCCAGATCGATGGCAGAAAATGGCCAGAGCCATAGGAGGGAAGACAGTGGAGGAAGTGAAAAGGCATTATGATATGCTTGTGGAAGATTTGAAGCAGATTGAAGAAGGTCATGTACCCTTGCCCAATTACAGAAATGGTTCAACAATAGGAGGCAGCATCAAAGGTTACAGTTGCACAGATGAAAAACAAAGGTTGAAGGTTCTAAGCCTCCAGTGA 294 0.4422 MASSSAWTTKQNKKFENALAIYDKDTPDRWQKMARAIGGKTVEEVKRHYDMLVEDLKQIEEGHVPLPNYRNGSTIGGSIKGYSCTDEKQRLKVLSLQ* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02324 97 FunFam Transcription factor SRM1 1 66 - -
Rops9g02324 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 73 IPR044636 GO:0003700
Rops9g02324 97 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Rops9g02324 97 SMART sant 3 55 IPR001005 -
Rops9g02324 97 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
Rops9g02324 97 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Rops9g02324 97 Gene3D - 1 66 - -
Rops9g02324 97 CDD SANT 6 53 IPR001005 -
Rops9g02324 97 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02324 Rops-Chr9 42780358 42781402 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops9g02324 Myb_DNA-binding 2.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02324 9 42780358 42781402 Rops9g02324 9 42780358 42781402 ECH
Rops9g02324 9 42780358 42781402 Rops10g02376 10 41895248 41895558 PCT