Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02319 ATGTCAATGTCGTTTTCCTCAGTCCCTGCTCGTCTCACTCTCCTCGCTCTCTTCTCCGCCACCACCTTCTATTGCCTCTACAAATCGCGTCGTTTAAGACTCTTAAAACTCTCTCTCTCCCAAAACCCTAACCCTAAACCTAAAACCTCTCTTCCAAAGATTCTCTTCATTTCCGAAACTGGAACCTCCAAATCCCTCGCTAACCGTCTCCACCGTTTTCTTTCTTCAAACAGCGTCGTTTTTGAACTCGTCGATTGCCAACACTACGAACCCGAAGATCTCCCTAAGGAAAATATCCTTATCTTCATCGCTTCAACGTGGGAAGATGGAAAACCACCTCCATCTTCTAGATTCTTCGCCACGTGGCTCGCTGAAAGCGCTGAGGATTTTCGTGTTGGTTCGTTGCTTCTTTCACGGTGCAAGTTCGCGGTGTTCGGCGTTGGAAGTAAAGCCTACGGTGACTCCTTCAACGCTGTTGGTAAAGATCTAACGAAGCAAATGAAGGCGCTGGGAGCGAATGAGATGGTTCCTCTTTGTGAAGGGGATGTTGATGGTGATGACGTGGATGAGGTTTTTGATATGTGGTGTGAGAAGGTGGTTGGGTTGTTGAAGAAAGGTGGTGGTGGTTTGGAGATTGGTGATGATGATGATGGTGTTGATGGGGAATGTGGTGTGTCGAGTTCTTCTGAAGAGGGTTCTGATGTAGAGAGTGAGGTGGAGGAGACGGATATTGTTGATCTTGAGGATATTGCTGGTAAAGCTCCTTCGAGGAAGCATGTGGCTAAAGTGGAAGAGACTAATGGGAAATTGAATGGGGAAAAAGAAATGGTAACAAAGGTTGTTAGAGCGAATTTGGAGAAGCAGGGATATAAAATTATTGGTTCACATAGCGGTGTCAAGATTTGTAGATGGACCAAGTCGCAGCTTCGAGGTCGAGGTGGTTGTTACAAACACTCATTTTATGGAATCGAAAGTCACAGGTGCATGGAGACAACCCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACGAATCCAGTAGGGAAAAGTTGGCAGTGGAAGATGGATGATCCAATAGAGATTGTAAATTCTGCAATAGATCAGCACACAAATATGGTTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGCCTCTCACCACGGCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACCAAAGAAGGATTTCCACTTTTCTTGTTACAAATGCACAATTTCCAGAGAAAATTAAGTTGCTGAAGCCTATCACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGACTCTTTAAAGGCAATTGATAGACCACTCTTTGGAGATTTCTGGGAGCGATTCATTGATTCCTTGACTGCTCTGAGGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCCAAGTTCTTTAGCTTAGGAGAACCTGACTTTGTTGAAATCAAGGGAGTTACATATTGTGGCTCGTCCGCCACATCAAAATTGACAATGGAAAATGTCCCTTGGCATACTGATGTAAAAGCTTTCTCAGAGGCCCTGGCTCTTAAAAGCCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTTCACTCGTGTTGTGTCCTCCTAGCTAAAACTAAGAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGAGAAATTTCAGGATCTGGTGGCGTCTGGAAGAACCTTTGACAGCAGAGATTACATGGCTGCCACACCATCCTGGGCCGTCTATGGATCAGATGAAGGTGGATTTGATCCAGGACAATCGAGATATAGGAAAGAGAGACGTCACAAGTCAAGCCGCAATCAATCAGTTGCAGAATATAGAGATTAG 1971 0.4444 MSMSFSSVPARLTLLALFSATTFYCLYKSRRLRLLKLSLSQNPNPKPKTSLPKILFISETGTSKSLANRLHRFLSSNSVVFELVDCQHYEPEDLPKENILIFIASTWEDGKPPPSSRFFATWLAESAEDFRVGSLLLSRCKFAVFGVGSKAYGDSFNAVGKDLTKQMKALGANEMVPLCEGDVDGDDVDEVFDMWCEKVVGLLKKGGGGLEIGDDDDGVDGECGVSSSSEEGSDVESEVEETDIVDLEDIAGKAPSRKHVAKVEETNGKLNGEKEMVTKVVRANLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNSAIDQHTNMVKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHQRRISTFLVTNAQFPEKIKLLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALREKHQRTVYRLTLVKGWNTEDVDAYSKFFSLGEPDFVEIKGVTYCGSSATSKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHVHSCCVLLAKTKKFKIDGQWYTWIDYEKFQDLVASGRTFDSRDYMAATPSWAVYGSDEGGFDPGQSRYRKERRHKSSRNQSVAEYRD* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02319 656 PRINTS Flavodoxin signature 101 112 IPR001094 GO:0010181
Rops9g02319 656 PRINTS Flavodoxin signature 139 149 IPR001094 GO:0010181
Rops9g02319 656 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181
Rops9g02319 656 PRINTS Flavodoxin signature 53 66 IPR001094 GO:0010181
Rops9g02319 656 Gene3D Aldolase class I 259 591 IPR013785 -
Rops9g02319 656 Pfam Flavodoxin 54 195 IPR008254 GO:0010181
Rops9g02319 656 SFLD Radical SAM 272 583 IPR007197 GO:0003824|GO:0051536
Rops9g02319 656 Pfam Wyosine base formation 516 579 IPR013917 -
Rops9g02319 656 CDD Radical_SAM 333 509 - -
Rops9g02319 656 SUPERFAMILY Flavoproteins 54 204 IPR029039 -
Rops9g02319 656 Gene3D - 32 208 IPR029039 -
Rops9g02319 656 MobiDBLite consensus disorder prediction 624 656 - -
Rops9g02319 656 SUPERFAMILY Radical SAM enzymes 334 514 - -
Rops9g02319 656 ProSiteProfiles Radical SAM core domain profile. 321 564 IPR007197 GO:0003824|GO:0051536
Rops9g02319 656 Pfam Radical SAM superfamily 332 512 IPR007197 GO:0003824|GO:0051536
Rops9g02319 656 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 264 593 - -
Rops9g02319 656 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 40 646 IPR034556 GO:0008033|GO:0051539
Rops9g02319 656 ProSiteProfiles Flavodoxin-like domain profile. 52 200 IPR008254 GO:0010181
Rops9g02319 656 SFLD tRNA wybutosine-synthesizing 272 583 IPR034556 GO:0008033|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02319 Rops-Chr9 42685079 42689761 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02319 9 42685079 42689761 Rops9g02319 9 42685079 42689761 ECH