Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02286 ATGGGTTGGCTTAGCAGAATTTTTAAAGGCGCCGACCATAAGATTTCAGAAGAGCATTATTATAAAGATGATTCAGATTATTGTTTGCCATCAACTTCAGGGGATGTTTGGATCGAGAATGAGAATGAAGATATAGATCGTGCTGTTGCACTGTCTTTGGTAGAACAAAATAAGAAAGCAAACAATGTAAATGACTACAGATCACAATTGGATGAAGATGAACAACTTGCTAGAGCTATAGAAGAAAGCCTAAATTTGGAGTCTCCTCCCAGATATGGAAACGAAAATATGTATCAACCAATTCAGTATTTCCCAATGGGGTACAGGATTTGTGCTGGCTGCAATACTGAGATTGGTTACGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGTAACCTACCAATCTCTGATAATGAGTTCTCCACATCTGGAAATTACCCCTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATAATACTCCTCGCTGTTGCAGCTGTGAGCGAATGGAGCCACAAGAGGCAGGATATATTGCACTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGTCTGGATTCTGCTATCATGGATACTAACGAATGCCAGCCCCTTTATGCTGATATACAGAGATTTTATGAAAGCCTTAATATGAAATTGGATCAGCAAATTCCATTACTGTTGGTTGAAAGACAAGCATTAAATGAAGCAAGAGAGGGAGATAAGAATGGCCACTATCACATGCCGGAGACCAGAGGACTCTGCCTTTCAGAGGAACTCAGCACTATTTCAAGACGACCTAGACATGGGGCTGGAAATAGAGCAATAGACCTGAGAACACAGCCATACAAACTGACTGCACGCTGTGATGTGACAGCAATTCTCATTTTGTTTGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTGAGAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAAGTTTTGGCTCATATATGGTTGGAGTCTGAGCTATCTTCTGCATCAGGCAGCAACTTTGCATCAGCCTCATCCTCATCCGCATCCGCATCATATGCATCTAGAAAAGGTAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGTGATGGATTTAGGGCAGGTCAAAGAGCAGTTTCTAAGTATGGCCTACAAAGGACCCTTCACCATATCAAGATGACGGGGACTTTTCCATATTGA 1422 0.4241 MGWLSRIFKGADHKISEEHYYKDDSDYCLPSTSGDVWIENENEDIDRAVALSLVEQNKKANNVNDYRSQLDEDEQLARAIEESLNLESPPRYGNENMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLNAFWHPECFRCRACNLPISDNEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMEPQEAGYIALKDGRKLCLECLDSAIMDTNECQPLYADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTISRRPRHGAGNRAIDLRTQPYKLTARCDVTAILILFGLPRLLTGSILAHEMMHAWLRLRGFRTLSQDVEEGICQVLAHIWLESELSSASGSNFASASSSSASASYASRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQRAVSKYGLQRTLHHIKMTGTFPY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02286 473 SMART uim 40 59 IPR003903 -
Rops9g02286 473 SMART uim 71 90 IPR003903 -
Rops9g02286 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 136 - -
Rops9g02286 473 Pfam LIM domain 111 165 IPR001781 -
Rops9g02286 473 Pfam Protein DA1 261 468 IPR022087 -
Rops9g02286 473 FunFam Protein DA1-related 1 105 164 - -
Rops9g02286 473 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Rops9g02286 473 SMART lim_4 110 162 IPR001781 -
Rops9g02286 473 ProSitePatterns LIM zinc-binding domain signature. 111 145 IPR001781 -
Rops9g02286 473 CDD LIM_DA1 111 163 - -
Rops9g02286 473 Gene3D Cysteine Rich Protein 107 170 - -
Rops9g02286 473 Coils Coil 63 83 - -
Rops9g02286 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Rops9g02286 473 PANTHER PROTEIN DA1-RELATED 2 3 473 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02286 Rops-Chr9 42278818 42287391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops9g02286 DA1-like 7e-95 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02286 9 42278818 42287391 Rops9g02286 9 42278818 42287391 ECH