Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02258 ATGGGAGGACAAAACTGTGATGGTTGCAGATCATGGGTGGAAGATATTTACTGGACCCATTTCCAATTTCTCCATTTTGCACAGTTTCTCCGTGATGGTTATGATCAACAACTTGCACTTCCCAAAACATTTTCTGATAATTTAAAGAGGAAGTTGCCTGATAATGTGGTCCTTAAAGGTCCTGGTGGTGTTGTGTGGAACATAGGGCTGACAACTAAAGATGATAACTTGTACTTCAAGCAAGGTTGGGAACAATTTGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTAGTCTTCAAGTACAATGGTGAATCTCTATTTGATGTTATAATATTCGATGGGGAGAGCTTCTGTGAGAAGGCAGGTTCTTATTTTGTTAGAAAATGTGGGCATACTACTGAACATGGTGGTGGATGTTCTAGCAAGAGAAGAGACACTGATAATTCTGTTGAAGAAGTTAACACCCCTTCTAATGGTGGTGTTGAATGTGTTTCACCTGATAAATCTGTGCATCTTAACAGTATAAAAGTGCCATTTGCTGTACCTCTACCTACTGAAACTCCAAATGAAAAGACTTTCAATACTGGTGTTGATTCTGCATGCCCTGAACAATTTATGTCTGGTGTTGAAACTGCTTTCCCTGAGCAGGTTATGTCTGATGTAGTCACTGAGGCAGTAGCTGTTCCCTCTCAAACTACTGGTAAAAGGACTAGGAATGCTCCTTATGCTGTCAAGCATGCCCAGAAAAAGAGGAGAGGAAGACCACCAAAAACACCTAAACCTCGTCAGAAAGCTCTTAACTTGGTGACTGACCCTGAACCTGAACCTGAAGCTGAAGCTGAACCAGAACTGGAACCTCAACCTGATCCTGCTTCAGGGGGAGGTAAAACTGGGACATATGAAATATATACCTCAAATAGAAGGCCTGTCTCAGAAATTGAGATTCATAATGCCCTCCAATTGGCCCTGGCAGCATGTACCCCTGACAGTTTGCATGTAGTTATGCGACCTTCGCATGTATATAAGAGATTCTTTGTGTCAATGCCTAATAAGTGGATATTAAACTATCTCACTCAAAGAACTCAAGATGTGATATTGCGCTTGGGTAATGGTGAATGGCTTGCCAGATACAGCTACCATCACATTCGTGGTAATGGAGGACTTACTGGTGGGTGGAAACATTTTGCCATGGAAAATAACCTGGAAGAGTTTGATGTTTGTGTGTTTAAACCAGCTGGTCAAATTAACAGCACATTGATCATTGATGTGAGCATTTTTAGAGTTGTTGAAGAGATTACTCCTCTGACTGCTGTGAATTCTCCTGCAAAGAGGGGTAGGAAAAAAGCAATCAATGCTATGGTGGCAGAAATTTTGTCCATTTGA 1386 0.4113 MGGQNCDGCRSWVEDIYWTHFQFLHFAQFLRDGYDQQLALPKTFSDNLKRKLPDNVVLKGPGGVVWNIGLTTKDDNLYFKQGWEQFVKDHSLKENDFLVFKYNGESLFDVIIFDGESFCEKAGSYFVRKCGHTTEHGGGCSSKRRDTDNSVEEVNTPSNGGVECVSPDKSVHLNSIKVPFAVPLPTETPNEKTFNTGVDSACPEQFMSGVETAFPEQVMSDVVTEAVAVPSQTTGKRTRNAPYAVKHAQKKRRGRPPKTPKPRQKALNLVTDPEPEPEAEAEPELEPQPDPASGGGKTGTYEIYTSNRRPVSEIEIHNALQLALAACTPDSLHVVMRPSHVYKRFFVSMPNKWILNYLTQRTQDVILRLGNGEWLARYSYHHIRGNGGLTGGWKHFAMENNLEEFDVCVFKPAGQINSTLIIDVSIFRVVEEITPLTAVNSPAKRGRKKAINAMVAEILSI* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02258 461 Gene3D - 316 432 IPR015300 -
Rops9g02258 461 MobiDBLite consensus disorder prediction 243 260 - -
Rops9g02258 461 SUPERFAMILY DNA-binding pseudobarrel domain 22 114 IPR015300 -
Rops9g02258 461 CDD B3_DNA 37 114 IPR003340 GO:0003677
Rops9g02258 461 ProSiteProfiles B3 DNA-binding domain profile. 332 430 IPR003340 GO:0003677
Rops9g02258 461 MobiDBLite consensus disorder prediction 229 302 - -
Rops9g02258 461 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 433 IPR044837 -
Rops9g02258 461 SUPERFAMILY DNA-binding pseudobarrel domain 333 416 IPR015300 -
Rops9g02258 461 CDD B3_DNA 335 428 IPR003340 GO:0003677
Rops9g02258 461 Gene3D - 20 119 IPR015300 -
Rops9g02258 461 SMART B3_2 26 116 IPR003340 GO:0003677
Rops9g02258 461 SMART B3_2 332 430 IPR003340 GO:0003677
Rops9g02258 461 Pfam B3 DNA binding domain 334 415 IPR003340 GO:0003677
Rops9g02258 461 Pfam B3 DNA binding domain 35 111 IPR003340 GO:0003677
Rops9g02258 461 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Rops9g02258 461 MobiDBLite consensus disorder prediction 136 160 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g02258 B3 2.3e-10 CL0405