Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02257 ATGGCTTGTGAGTGTGAGGGAAAGTTAAATGTGAGAAGGCCTCACTTCTATGAGATTTATTCCTCTTCCTCTAACTCTGAGAAACTGAAAATTCCAGATGCTTTCGTCTGTAGAATGGAGGGAAGGACTTATGGATTGGTTTCATTAACTGGTCCTAGTGGAAACAATTGGCCTGTTCGACTAGTTAAGCAAGGCAATGATCTATTCCTCCATCATGGATGGCCAACGTTTGTGGGAGATCATCATTTAGAATGTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACTTGCATTTCACTGTGCAAGTATTTGATAAGAGTACTTGTGAGAAAGAAGCAGCATTTCATTCTGAATGCAGTCAAAATTCATGCAACCTTGATAATACTAAAGGACAGAAAAGAGATAGTAATGAGAATTCTTCTTTGGACGTTGTTGTTGATGGTGTTCCGAAGAAAATGAGATGTAGCACCATTGAGAACCATGAGCTGGAGCTGGGTATTGTTGGTAAAGAACTATACAGGTATGAGGTAGTAAAACCAATTAGTATGTTCAGAGAAACAGAAGAAACCTCCAAAGAATGTTCGGCTAGTGCTGTCCCTGTGCCTTTTCACATGGAAAATGGCAATGAAGATGAAGAGGCAGCTATCTTGTATAGAAGTGGGAAGGAAGATGATCATTATATTCTCAGTGGAGTTTCACTATCAAATTTATCAGCACATGATGAGAAAAAAGTAGCTCGGTCATTTACTTCCTCTTTTCCATATTTTGTTAGAATAATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCGTATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTGCCAACAACTAGAGTTCATACAAGTCATACTCTCTGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAACATAAAGGTTGGAGATATCTGCATTTTTGAACTTATACATGAGTGTGAATTACGCGTTTGCATTGCTGGGGTTGGAAAAGATGGGCTAGACTGCCAGGTTGGAAAACCAGCTTTTAGTATGCCTAATGCAGAACATGCTGTAACTTGCAACAAGACTTCCAGATATATGCCAATTAATCCTAAAGTCAGCTCAAAATGCGTAAGCAAAGTTGATCTATCAGATAAAAAGTGGTCAAAGATTGGTCAAGAAGCTGTTTTATCCATTGATTTAAAGAAATCTGGTAGAGCTTCAAATATTTCGAAGAAGATGGGGCTTTGCTCTCAGTCTCAAGCTGCCCATAAAAAGTTGGCTGCTCAGAGGAGACATCGTGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCTTTCACTTCCCCTTTTCCTAGTTTTGTGAAAATCATGAAAAAGTTCAACGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCCGCTGCTCATCTCCCTACCTACAAAACAGAAGTTATGCTTCGAAATTCAAGAGGTGAATGTTGGACCGTGAACTCTGTCCCAGATGCAAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGATGGCTTTTGTTCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCACAGTGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAAATGGACACATGAAACTCAGCAGATTAGCTACCGATCCTTCTACCTGTTAA 1815 0.3978 MACECEGKLNVRRPHFYEIYSSSSNSEKLKIPDAFVCRMEGRTYGLVSLTGPSGNNWPVRLVKQGNDLFLHHGWPTFVGDHHLECGDLLVFRYEGHLHFTVQVFDKSTCEKEAAFHSECSQNSCNLDNTKGQKRDSNENSSLDVVVDGVPKKMRCSTIENHELELGIVGKELYRYEVVKPISMFRETEETSKECSASAVPVPFHMENGNEDEEAAILYRSGKEDDHYILSGVSLSNLSAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELIHECELRVCIAGVGKDGLDCQVGKPAFSMPNAEHAVTCNKTSRYMPINPKVSSKCVSKVDLSDKKWSKIGQEAVLSIDLKKSGRASNISKKMGLCSQSQAAHKKLAAQRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVMLRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGHMKLSRLATDPSTC* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02257 604 SUPERFAMILY DNA-binding pseudobarrel domain 478 579 IPR015300 -
Rops9g02257 604 CDD B3_DNA 21 105 IPR003340 GO:0003677
Rops9g02257 604 ProSiteProfiles B3 DNA-binding domain profile. 485 581 IPR003340 GO:0003677
Rops9g02257 604 Gene3D - 238 351 IPR015300 -
Rops9g02257 604 Gene3D - 470 580 IPR015300 -
Rops9g02257 604 Pfam B3 DNA binding domain 256 347 IPR003340 GO:0003677
Rops9g02257 604 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Rops9g02257 604 Pfam B3 DNA binding domain 485 572 IPR003340 GO:0003677
Rops9g02257 604 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Rops9g02257 604 SUPERFAMILY DNA-binding pseudobarrel domain 249 350 IPR015300 -
Rops9g02257 604 ProSiteProfiles B3 DNA-binding domain profile. 256 352 IPR003340 GO:0003677
Rops9g02257 604 CDD B3_DNA 483 577 IPR003340 GO:0003677
Rops9g02257 604 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Rops9g02257 604 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 354 IPR044837 -
Rops9g02257 604 Gene3D - 8 109 IPR015300 -
Rops9g02257 604 SMART B3_2 485 581 IPR003340 GO:0003677
Rops9g02257 604 SMART B3_2 16 107 IPR003340 GO:0003677
Rops9g02257 604 SMART B3_2 256 352 IPR003340 GO:0003677
Rops9g02257 604 CDD B3_DNA 254 348 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02257 Rops-Chr9 41739262 41743573 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops9g02257 B3 3e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02257 9 41739262 41743573 Rops9g02257 9 41739262 41743573 ECH