Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02250 ATGGAAGCACTTAACAGATGCTCCTCTTCCACTTCTTCTTCTTATTCTTCCACTTCAGAGAGTGAAAACTCAAAAAAACAAGAGAGAACAAAAGGTCCATGGAGTGTAGAAGAAGATCGGATCCTGACCCGACTCGTTGAAACTCATGGTCCCCGAAACTGGTCCTTCATAAGCCGTTACATAAAGGGTAGGTCCGGCAAGTCATGTCGGCTCCGGTGGTGTAATCAGCTGAGTCCCACGGTGGAGCACCGACCATTCTCGCCGGAAGAGGATAACATCATCGTTGATGCACATGCAAGGTACGGTAATAGGTGGGCCACCATTGCCCTGTTGTTACCGGGTCGAACCGATAATGCGGTTAAGAATCATTGGAACTCTACTCTTAAACGGAGTGTCCAACGGCGTCGTTTTGTTAACGGCGTTAGGGATGTTGGTTCTTCTCACGGATCTGATAATGACCCGTTGACAGCGTTGACTCTGGCGCCGCCGGGGAGTGGTGACGGTGCTGGTGGGGAGAAAAGAGATTCGCCGGAGAGTGTGCCGCCGGGGTTTTGGGATGCGATGAGAGATGTGATTGCCAGAGAAGTGAGAGAATATATGTCTTCCACTACTTAG 615 0.5024 MEALNRCSSSTSSSYSSTSESENSKKQERTKGPWSVEEDRILTRLVETHGPRNWSFISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPEEDNIIVDAHARYGNRWATIALLLPGRTDNAVKNHWNSTLKRSVQRRRFVNGVRDVGSSHGSDNDPLTALTLAPPGSGDGAGGEKRDSPESVPPGFWDAMRDVIAREVREYMSSTT* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02250 204 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Rops9g02250 204 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Rops9g02250 204 MobiDBLite consensus disorder prediction 1 34 - -
Rops9g02250 204 MobiDBLite consensus disorder prediction 142 186 - -
Rops9g02250 204 FunFam MYB transcription factor 31 82 - -
Rops9g02250 204 Pfam Myb-like DNA-binding domain 34 91 - -
Rops9g02250 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 132 IPR017930 -
Rops9g02250 204 MobiDBLite consensus disorder prediction 1 21 - -
Rops9g02250 204 SUPERFAMILY Homeodomain-like 29 124 IPR009057 -
Rops9g02250 204 SMART sant 30 79 IPR001005 -
Rops9g02250 204 SMART sant 82 130 IPR001005 -
Rops9g02250 204 CDD SANT 33 75 IPR001005 -
Rops9g02250 204 Gene3D - 22 83 - -
Rops9g02250 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Rops9g02250 204 Gene3D - 84 143 - -
Rops9g02250 204 CDD SANT 85 128 IPR001005 -
Rops9g02250 204 PANTHER MYB PROTEIN-RELATED 31 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02250 Rops-Chr9 41646995 41647694 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02250 Myb_DNA-bind_6 2.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02250 9 41646995 41647694 Rops9g02250 9 41646995 41647694 ECH