Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02210 ATGGCTCTTCTTCTAGACAATTATGAAGGCATTTTGCTCTCTTTAGAAACTCACAAATCAGTGCCAGCACCATTCCTTACAAAAACATACCAACTTGTAGATGATCCCGCCACCGATCATGTGGTTTCTTGGGGTGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTTGCTAGGGATCTTCTACCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAGAAAGATTGTGCCTGATAGATGGGAGTTTGCTAATGAATACTTCAAGAGAGGAGAGAAGCACTTGTTGTGTGAGATCCATAGAAGAAAAACTGCTCAACCTCAACAAGTAGCTATGAATCACCATCATCATCCTCATATTGGACTCAACACCCCAACTTTCTTTCCCTTTCACAACAGAATCAGCATCTCTCCTCCAAATGACTCTGATGAGTTTGGTAATTGGTGTGACTCGCCACCACTTACTTCCCCAAAAGGAGGAGGAAGCAACTATAACACGGTTACAGCACTTTCTGAGGACAATGAAAGATTGAGGAGAAGCAACAATATGCTAATGTCTGAGCTAGCACACATGAAGAAGCTTTATAATGACATAATCTACTTTGTTCAGAACCATGTTAGGCCTGTGGCTCCAAGCAACTCTTATCCTTCTTTTCTACTCTCCAATACACCACAACAAGCCTCTTCTGTTTCTACTTGTAACGTTTCAACGGTGCAAAGACCAATGAACCAGTTTCTGGGGTATCATTCAACAAACACAAAGCAACCCCATGGTGCGAACATGAACACTCCCACTAACACTTCAATAACATTTGTTGAAAAACCAAGCAATAACAGTTGCAAGACTAAGCTTTTTGGGGTTTCTCTTCAATCCAAGAAAAGGGTGCACCCTGAGTACGGATCTAATCTCATGAATTCAGAAACGAACAAGGCTCGTTTGGTTTTGAAAAATGATGACTTAGGCTTGAATCTCATGCCTCCTTCAACTTGTTAG 1029 0.4208 MALLLDNYEGILLSLETHKSVPAPFLTKTYQLVDDPATDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKRGEKHLLCEIHRRKTAQPQQVAMNHHHHPHIGLNTPTFFPFHNRISISPPNDSDEFGNWCDSPPLTSPKGGGSNYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVRPVAPSNSYPSFLLSNTPQQASSVSTCNVSTVQRPMNQFLGYHSTNTKQPHGANMNTPTNTSITFVEKPSNNSCKTKLFGVSLQSKKRVHPEYGSNLMNSETNKARLVLKNDDLGLNLMPPSTC* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02210 342 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops9g02210 342 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops9g02210 342 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops9g02210 342 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops9g02210 342 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 262 IPR027725 -
Rops9g02210 342 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Rops9g02210 342 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops9g02210 342 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops9g02210 342 Gene3D - 17 116 IPR036388 -
Rops9g02210 342 Coils Coil 179 199 - -
Rops9g02210 342 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02210 Rops-Chr9 40491425 40492909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02210 1 341 HSF AT1G46264 57.796 8.64e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops9g02210 HSF_DNA-bind 1.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02210 9 40491425 40492909 Rops9g02210 9 40491425 40492909 ECH
Rops9g02210 9 40491425 40492909 Rops10g01096 10 22755917 22757358 PCT