Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02207 ATGGCTAATAATATGCACCAAACTCAACCCTCTTTAGCAAGAACCTTACCTTCTTCTGATTCTGAAGAGTTCTCCACCTTGTTCCTCCATAACTCACCTGTGATGGATCCGAACCATTCCGGGTCTGATTTCAACACCCTCCACTTGGGTTCTTCCTCTCTCTCCACTTTCAATTTCTCTGATCCTTATGCTAATGCTTGCATCAATGACCCTCATGTTAACAACACCTTCAAACAACACACTGTTTTTTCTACACAGAAGCAGAATCAACCCTGTGATTTCACTTGTTCTGTTGAGAATGCTGAGACTTCAGAGTTTCCATCATCTAAGCCTGCCCCACCACCACTTTCTTCTTCAAAGAGGAGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAATAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATCGAATATTTAAAGCAGCTTCAGCTTCAAGTACAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTGTATCAGGAGGACTGAGACCAATGCTATTGCCTCAAACTGGGTTGAATCTTGATGAGGGTAATGGATTTCAGAATTCTATCAATGCAATTGCCTCATCTGCAAATGATGAAGGTTTGGGGCGGCCAGCTTTTAGTTTTCCAGAACAATGCAGCATCTCAAATCAATCTGTTGTCATACCCTCAGTGACAAATATAGCTACTTTGCATACCTCATCCAGTTTTCAACCCTCTATCAAGGATGCACTCTGCGGCAACATGCCACAACTGTTTTTGGATACAATAAAGATTGGAAAAACCCCTTCTCCAGATGTGTCTTAA 891 0.4119 MANNMHQTQPSLARTLPSSDSEEFSTLFLHNSPVMDPNHSGSDFNTLHLGSSSLSTFNFSDPYANACINDPHVNNTFKQHTVFSTQKQNQPCDFTCSVENAETSEFPSSKPAPPPLSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSVSGGLRPMLLPQTGLNLDEGNGFQNSINAIASSANDEGLGRPAFSFPEQCSISNQSVVIPSVTNIATLHTSSSFQPSIKDALCGNMPQLFLDTIKIGKTPSPDVS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02207 296 MobiDBLite consensus disorder prediction 103 135 - -
Rops9g02207 296 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 11 269 IPR031066 -
Rops9g02207 296 SMART finulus 129 178 IPR011598 GO:0046983
Rops9g02207 296 FunFam Basic helix-loop-helix transcription factor 118 181 - -
Rops9g02207 296 CDD bHLH_AtPIF_like 123 185 IPR047265 -
Rops9g02207 296 Gene3D - 118 182 IPR036638 GO:0046983
Rops9g02207 296 Pfam Helix-loop-helix DNA-binding domain 127 173 IPR011598 GO:0046983
Rops9g02207 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Rops9g02207 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02207 Rops-Chr9 40455120 40458027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02207 123 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 68.571 3.12e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g02207 HLH 3.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02207 9 40455120 40458027 Rops9g02207 9 40455120 40458027 ECH