Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02206 ATGCAAGGGCAGAGGGGTACAATTGGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGATCTACATCGAGCAACGCTGCAGTTGATCAGCATATTTTCTGGAATGATATGCGGAATCCTGCAGAAAATCGACTACCTGAATATATACTTCCCCCCAGCGATATCAACCCATCTTACGATAATACTATAAACCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACACAGAATGTGGTCAACAACAATGAACAGAAAAGGGAGCTAGGATTATCATCTTCCATAAATGCTGGTGCTATAGCTGGTCCAAGACTAGAAGAAAGGCACTTTGAACCAACCAATGCTTTTTCATTGGACAATGTCAATACAAGTCCTATATTTATGTGCAGCTCCAGTTCTCATTTGGGGCCGCAGAATCTCAACTTAAATGCTGGTTTTGCAGATAGTGGCAATGGGAATAGCTATCATGTGGAACATTCCAACTTGCATAAGTCTACTGGACCAGTAAATGAGCATATTCCACCTACTACTGGTTCTAATTCTTTTCTGCTTCCTTCTGGAAGTAACAGCATTTTTGTTGAGGATAATGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGAAATGTTGGACAATCTTCAGATGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGCAGTGCTTGGAACACTCTTCCCACTCAGGATTATGCAGGGAGCAGCTTTAACAGACCTGCATACGCAGAACAGGTAAATGCAAGACTTGGCCTGAGTATGGGGGATGGAGCCTCGGAAAGTGTTCCCGAGTCAACTGTTGCAGGAAGCTCAGAAAGCTTCCACCGAAATTTTCGTTTGAGGATAAATCCTTCAAGCCAACAAGTTTCTGTTCCTCCGACTACATTCTCGAATGGGAGTCTGTTCAGGAATTCTGGTGTTTCTTCGTCTCCAATAATGCCAAGGTTTCACCCTGTTGACAATCCTCTGGACTTGAGGTCAGTACCACTGGTAGATGCCGCGATTCCTCAAAGCCAGCCCCTTCTAATTCATGTTCCTGCTTTACCAAGGAATATGCAGTCATTCAGGTGGGGTGGTGGTTCTAGCTCAACAAACAACCATTCATCAAACCCAGTTATATGTGATAGGAATAATCCTCCACATGAGGAAGCAAGCTCAAGGAGCATGCCTAGAAACATTTTAGAACATCCAGTGTTTGTACCTGCAACAAATTTAAGAAATGTGGTTCGAAATCCAACTAGAGCTTCAAGCAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACAGACTGGGGAAAATTCAGCTATCAATCCACCAGCCTCAACATGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGCAGGTTATCTGAATATGTTCGTCGGTCCTTGTTTCCTCCTGTTTCTGAAGCTTCTGGAAGTCCAACCAATAATTATTCTTCCTTGCGTGGTCCTTCTACTTCATCTGAATCAAGGGGACTGTCATCTGGGGTAAACCCAGGATCATCTTCATGGTTGGAGAGATCAGCTGATAGTGAATTTGGAATTCCCTATTCATTACGATCTTTGGCAGTTGCTGGTGAAGGAAGCAGTAGACTTGTATCTGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAGCCTGCGATTGGAGGATGTTATGATCCTCGACCACTCAGTGTTTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAAGAACGCATTGGAAATGTGAGTACTGGATTGAGTGGGGAAACCATAATGGAACTTTTGAAACAGAAGAAGTATTCAGTTGAACCAGGAACTCAGCTTGAGGCAGAACCTTGTTGTATCTGTCAGGAGGAGTATAATGATGGAGATGATATGGGATCACTGGATTGTGGGCATGATTACCATACCAAGTGTATTAAACAGTGGCTAATGCATAAGAATCTATGTCCAATTTGTAAGACAACAGGGTTGGCAACATGA 2100 0.4362 MQGQRGTIGSLPETLEFDCGSTSSNAAVDQHIFWNDMRNPAENRLPEYILPPSDINPSYDNTINHEWQNLSGWSLGEPSSSNTQNVVNNNEQKRELGLSSSINAGAIAGPRLEERHFEPTNAFSLDNVNTSPIFMCSSSSHLGPQNLNLNAGFADSGNGNSYHVEHSNLHKSTGPVNEHIPPTTGSNSFLLPSGSNSIFVEDNDGRPGCSLDTRRVSCKRKAVERNVGQSSDGGSSSYSQHTDGSAWNTLPTQDYAGSSFNRPAYAEQVNARLGLSMGDGASESVPESTVAGSSESFHRNFRLRINPSSQQVSVPPTTFSNGSLFRNSGVSSSPIMPRFHPVDNPLDLRSVPLVDAAIPQSQPLLIHVPALPRNMQSFRWGGGSSSTNNHSSNPVICDRNNPPHEEASSRSMPRNILEHPVFVPATNLRNVVRNPTRASSSANLSIPGNVASSSQTGENSAINPPASTWVSRPNPPQYPRRLSEYVRRSLFPPVSEASGSPTNNYSSLRGPSTSSESRGLSSGVNPGSSSWLERSADSEFGIPYSLRSLAVAGEGSSRLVSELRNVLGLMRRGGSLRLEDVMILDHSVFADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSGETIMELLKQKKYSVEPGTQLEAEPCCICQEEYNDGDDMGSLDCGHDYHTKCIKQWLMHKNLCPICKTTGLAT* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02206 699 MobiDBLite consensus disorder prediction 436 475 - -
Rops9g02206 699 MobiDBLite consensus disorder prediction 495 528 - -
Rops9g02206 699 Pfam Ring finger domain 652 693 IPR001841 -
Rops9g02206 699 MobiDBLite consensus disorder prediction 492 528 - -
Rops9g02206 699 SMART ring_2 652 692 IPR001841 -
Rops9g02206 699 MobiDBLite consensus disorder prediction 220 250 - -
Rops9g02206 699 MobiDBLite consensus disorder prediction 380 414 - -
Rops9g02206 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 696 IPR013083 -
Rops9g02206 699 SUPERFAMILY RING/U-box 639 695 - -
Rops9g02206 699 ProSiteProfiles Zinc finger RING-type profile. 652 693 IPR001841 -
Rops9g02206 699 FunFam E3 ubiquitin-protein ligase MBR2 620 697 - -
Rops9g02206 699 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 697 IPR045191 GO:0061630
Rops9g02206 699 MobiDBLite consensus disorder prediction 380 398 - -
Rops9g02206 699 MobiDBLite consensus disorder prediction 436 468 - -
Rops9g02206 699 MobiDBLite consensus disorder prediction 228 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02206 Rops-Chr9 40444335 40451258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02206 1 699 C3H Transcription Factor Family AT2G15530 32.589 9.90e-82 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02206 9 40444335 40451258 Rops9g02206 9 40444335 40451258 ECH
Rops9g02206 9 40444335 40451258 Rops10g01099 10 22797760 22807223 PCT