Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02197 ATGGCGCAGATTCAGGTGCAACATCAAAGTCCAGTGGCCGTTTCTGCTCCTCCTCCTCCTCCTCAGAACGGTGTTGCTCCCGCTCCGAATACGAACCAGTTCGTTACGACGTCGTTGTACGTTGGTGATCTTGACCAGAATGTCAACGATTCGCAGCTCTACGATCTTTTTAACCAGGTCGGCCAAGTCGTTTCGGTTCGTGTCTGTAGGGATTTGACGACCCGTCGTTCACTCGGTTACGGTTATGTTAATTACAGTAACCCTCAGGATGCGGCAAGGGCATTGGATGTGCTGAATTTTACTCCCCTAAACACCAAATCCATTAGGATCATGTATTCTCATCGGGATCCTAGTATAAGGAAGAGTGGTACTGCAAATATTTTTATCAAGAATTTGGATAAGGCAATTGATCACAAGGCTTTACATGATACTTTTTCTTCTTTTGGGAATATTCTTTCTTGCAAAATAGCTACTGATGGCTCTGGCCAGTCCAAGGGCTATGGTTTTGTTCAACTCGAGAATGAGGAATCTGCACATAATGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAAGTCTATGTAGGTCATTTCCTACGAAAACAGGATAGAGAGAATGCTGTTAGTAAGACAAAATTCAATAATGTCTATGTGAAAAACCTGTCGGATTCAATGACAGATGAAGACTTAAAGAAAACTTTTGGAGAGTATGGGACCATTACGAGTGCTGTTCTAATGAGAGATGCAGATGGTAAATCAAAGTGCTTTGGTTTTGTCAATTTTGATAACCCAGATGATGCCGCTAAAGCCGTTGAGGCACTGAATGGAAAAAAATTTGATGACAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAGTCTGAACGAGAGCTTGAACTCAAAGGACGATTTGAGCAGAGTATAAAGGAAGCTGCTGACAAATATCAAGGTGTGAACTTGTATCTCAAAAACTTGGATGATACCATCAGTGATGAAAAACTTAAAGAAATGTTCTCCGAGTTTGGTACCATAACCTCATGCAAGGTTATGCGAGACCCAAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTTCTGAGGAAGCAACACGAGCTCTGGGAGAGATGAATGGTAAAATGATTGCTGGCAAACCTCTGTATGTTGCCCTTGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCAATTACTCCTTCTGTTGCACCCCGAATGCCCCTCTACCCTCCTGGCGCACCTGGTTTAGGACAACAATTTTTGTATGGGCAAGGACCCCCTGCCATGATGCCTCCACAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCAGGGATGAGACCTGGTGGTGCTCCAATGCCAAGCTTCTTTGTTCCCATGGTTCAGCAGGCTCAACAAGGCCAGCGCCCAGGTGGACGCCGAGGAGCAGGTCCTGTACAACAGCCCCAGCAGCCTGTGCCATTGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTATCGCTACCCTCCGGGTCGCAACATGCAAGATGTTCCACTGCCAGGAGTAGCTGGAGGAATGATGTCAGTTCCTTATGACATGGGTGGTCTGCCAGTCCGGGATACCGTGGGACAACCAATGCCCATTCATGCTTTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGCTAGTAGATCAACTGGAACATGATGCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTGATTGAGTCACCAGATGCTCTCAAGGCGAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTTCTCAACAGCAAGCCCCAGCCGATCAACTAGCCTCACTCTCTCTCAATGACAATCTCGTCTCTTAA 1968 0.4593 MAQIQVQHQSPVAVSAPPPPPQNGVAPAPNTNQFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNTKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGSGQSKGYGFVQLENEESAHNAIDKLNGMLINDKQVYVGHFLRKQDRENAVSKTKFNNVYVKNLSDSMTDEDLKKTFGEYGTITSAVLMRDADGKSKCFGFVNFDNPDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSIKEAADKYQGVNLYLKNLDDTISDEKLKEMFSEFGTITSCKVMRDPNGISRGSGFVAFSTSEEATRALGEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMVQQAQQGQRPGGRRGAGPVQQPQQPVPLMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMMSVPYDMGGLPVRDTVGQPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQQAPADQLASLSLNDNLVS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02197 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Rops9g02197 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 636 IPR002004 GO:0003723
Rops9g02197 655 Gene3D - 202 304 IPR012677 -
Rops9g02197 655 Gene3D - 305 409 IPR012677 -
Rops9g02197 655 Gene3D - 1 124 IPR012677 -
Rops9g02197 655 FunFam Polyadenylate-binding protein 302 407 - -
Rops9g02197 655 SMART poly_2 571 634 IPR002004 GO:0003723
Rops9g02197 655 FunFam Polyadenylate-binding protein 126 199 - -
Rops9g02197 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Rops9g02197 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Rops9g02197 655 SUPERFAMILY RNA-binding domain, RBD 37 206 IPR035979 GO:0003676
Rops9g02197 655 SUPERFAMILY PABC (PABP) domain 501 643 IPR036053 GO:0003723
Rops9g02197 655 FunFam Polyadenylate-binding protein 206 301 - -
Rops9g02197 655 SMART rrm2_1 126 198 IPR003954 GO:0003676
Rops9g02197 655 SMART rrm2_1 217 289 IPR003954 GO:0003676
Rops9g02197 655 SMART rrm2_1 320 392 IPR003954 GO:0003676
Rops9g02197 655 SMART rrm2_1 38 111 IPR003954 GO:0003676
Rops9g02197 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Rops9g02197 655 Gene3D - 555 638 - -
Rops9g02197 655 SUPERFAMILY RNA-binding domain, RBD 216 400 IPR035979 GO:0003676
Rops9g02197 655 MobiDBLite consensus disorder prediction 481 501 - -
Rops9g02197 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Rops9g02197 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Rops9g02197 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Rops9g02197 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Rops9g02197 655 Gene3D - 125 199 IPR012677 -
Rops9g02197 655 CDD RRM1_I_PABPs 38 117 IPR034364 -
Rops9g02197 655 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 632 IPR006515 GO:0003723
Rops9g02197 655 CDD RRM3_I_PABPs 215 294 - -
Rops9g02197 655 FunFam Polyadenylate-binding protein 24 125 - -
Rops9g02197 655 Pfam Poly-adenylate binding protein, unique domain 567 631 IPR002004 GO:0003723
Rops9g02197 655 CDD RRM4_I_PABPs 318 396 - -
Rops9g02197 655 SMART rrm1_1 217 289 IPR000504 GO:0003723
Rops9g02197 655 SMART rrm1_1 38 111 IPR000504 GO:0003723
Rops9g02197 655 SMART rrm1_1 126 198 IPR000504 GO:0003723
Rops9g02197 655 SMART rrm1_1 320 392 IPR000504 GO:0003723
Rops9g02197 655 PANTHER RNA BINDING PROTEIN 36 99 - -
Rops9g02197 655 CDD RRM2_I_PABPs 123 199 IPR045305 -
Rops9g02197 655 MobiDBLite consensus disorder prediction 1 30 - -
Rops9g02197 655 FunFam Polyadenylate-binding protein 555 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02197 Rops-Chr9 40259371 40266599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02197 1 650 Eukaryotic Initiation Factors Gene Family AT4G34110 68.300 0.0 870
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02197 9 40259371 40266599 Rops9g02197 9 40259371 40266599 ECH