Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02196 ATGAAGGTGCATCAGTTCACACGTGGATTTTGGGAGCACGAACCCTCCCTCTCACTTGGGTGCAAGCGCTTACGCCCTCTTGCCCCAAAGCTTTCTAACACCGATACCACTTCTACTACTACTACTACTACTACCACCACTTTTGATCTCAAGAGCTTCATCAAACCCGAAAGTGGCTCCAGAAAAGTTTCATCCTCTGATGATAATAATAAGAAAGATTCACCTTCACCACAGGGCCAGGTGGAAACTCATCCAGGAGGGACTAGGTGGAATCCAACACAAGAACAGATAGGGATATTGGAGATGTTGTATAGAGGTGGGATGAGAACTCCGAATGCTCAACAGATAGAGCAGATCACGGTTCAGCTTAGCAAATATGGTAAGATTGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGAGAAACAGTCTTGGCCTTGCTCATAGTCCTCGAACTTCAACCACAACAGTGTCACCCACCTTTAGTAGTATCATAACTTTGGAGACCCCAAAAAGGGGGGAAGTAGTGGAAAGAGATCAAGGAGATAGCCCGTTCAAGAAGTGTAGAAGCTGGGCATTTGAGTATTTGGAAGACCAAAGCTGGTCATCATCATGCAAAGAGGAGGAACATATAACTCTGGAGCTTTTTCCATTGCACCCGGAAGGGAGATGA 702 0.4573 MKVHQFTRGFWEHEPSLSLGCKRLRPLAPKLSNTDTTSTTTTTTTTTFDLKSFIKPESGSRKVSSSDDNNKKDSPSPQGQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTSTTTVSPTFSSIITLETPKRGEVVERDQGDSPFKKCRSWAFEYLEDQSWSSSCKEEEHITLELFPLHPEGR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02196 233 MobiDBLite consensus disorder prediction 70 93 - -
Rops9g02196 233 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 233 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Rops9g02196 233 SUPERFAMILY Homeodomain-like 84 153 IPR009057 -
Rops9g02196 233 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Rops9g02196 233 Gene3D - 87 154 - -
Rops9g02196 233 CDD homeodomain 88 149 IPR001356 GO:0003677
Rops9g02196 233 MobiDBLite consensus disorder prediction 55 93 - -
Rops9g02196 233 ProSiteProfiles 'Homeobox' domain profile. 83 148 IPR001356 GO:0003677
Rops9g02196 233 MobiDBLite consensus disorder prediction 146 169 - -
Rops9g02196 233 SMART HOX_1 85 152 IPR001356 GO:0003677
Rops9g02196 233 MobiDBLite consensus disorder prediction 153 169 - -
Rops9g02196 233 FunFam WUSCHEL-related homeobox 4 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02196 Rops-Chr9 40242528 40244234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02196 1 179 Wox Gene Family AT1G46480 59.893 3.86e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops9g02196 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02196 9 40242528 40244234 Rops9g02196 9 40242528 40244234 ECH