Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02182 ATGGCACATCAACACCCAAATTCCCTTCTAGATTCCCTTTACTGCTCAGAAGATCACTGGGAGGAACAAATAGTAGAAGATGAATACACCAATTACTTAACCACAGATACCCCTTTGATCTTGCTAGAACAGGACCTGTTTTGGGATGATGAAGAGTTAAAAACTCTTCTTGACAAAGAACACCAGAACCAACTCTGCACTTGCCTCCAAAATAACTCTGCCTTGGCTATATCTCGCAGTGAAGCCATAGAGTGGATGCTGAAAGTGAATGCTTATTACTCCTTCTTTTCTCTCACTGTTGTTCTTGCTGTCAACTACCTTGATAGGTTCCTTTTCAGCTTCAGATTTCAAAATGGGAAGCCATGGCTTACACAACTAGCTGCAGTGGCTTGTCTTTCACTTGCTGCAAAAGTGGAAGAGACCCAAGTGCCACTTTCTATAGACCTTCAAGTGGTGGAGAGTAGGTACTTTTTTGAAGCAAAAACTATTAAGAGAATGGAAATTTTGGTCCTTTCCACACTTGGATGGAAGATGAATCCGGTAACATCTATTTCATTTCTTGATTATATCACAAGGAGACTTGGGTTGAAGAGTTATCTTTGCTGGGAGTTCCTAAGGAGATGTGAGGCAGTTCTTCTCTCTGTCTTTGCAGATTCAAGGTTTATGAGTTACCTCCCCTCTGTGTTGGCAACTGCTACGATGATGCACGTGGTCACAAGTGTGGAGCCTCGTTTAGTAGTTGAATACCAAAATCAGCTCAAGGGTATTCTTGGATTCAACAAGGACAAAGTGGAAGAGTGTTACAACCTCATGTTAGAGATTGTGTCCGGGTATGACCATTGGAACAAGCAATATAAGTTCAACAAACGCAAGTTTGGGTCTTTTCCAAGTAGCCCAAATGGGGTAATGGATGGTTCATTTAGCTGTGATAGCTCAAATGAGTCTTGGGAGGTAGGTGCATCTGTTCCATCTTCACCAGAACCTTTGTCCAAGAAGACCAGGACTCGAGATCAGCTTCCATTGAACCATTCGAACTCAGATTTCAAACTTCCCCTTCCCCTTCCTTAA 1068 0.4242 MAHQHPNSLLDSLYCSEDHWEEQIVEDEYTNYLTTDTPLILLEQDLFWDDEELKTLLDKEHQNQLCTCLQNNSALAISRSEAIEWMLKVNAYYSFFSLTVVLAVNYLDRFLFSFRFQNGKPWLTQLAAVACLSLAAKVEETQVPLSIDLQVVESRYFFEAKTIKRMEILVLSTLGWKMNPVTSISFLDYITRRLGLKSYLCWEFLRRCEAVLLSVFADSRFMSYLPSVLATATMMHVVTSVEPRLVVEYQNQLKGILGFNKDKVEECYNLMLEIVSGYDHWNKQYKFNKRKFGSFPSSPNGVMDGSFSCDSSNESWEVGASVPSSPEPLSKKTRTRDQLPLNHSNSDFKLPLPLP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02182 355 CDD CYCLIN_AtCycD-like_rpt1 79 176 - -
Rops9g02182 355 FunFam D6-type cyclin 62 179 - -
Rops9g02182 355 MobiDBLite consensus disorder prediction 310 355 - -
Rops9g02182 355 SUPERFAMILY Cyclin-like 182 291 IPR036915 -
Rops9g02182 355 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Rops9g02182 355 Gene3D - 66 179 - -
Rops9g02182 355 SUPERFAMILY Cyclin-like 47 179 IPR036915 -
Rops9g02182 355 PANTHER CYCLINS 55 279 IPR039361 -
Rops9g02182 355 CDD CYCLIN_AtCycD-like_rpt2 181 271 - -
Rops9g02182 355 Pfam Cyclin, N-terminal domain 73 179 IPR006671 -
Rops9g02182 355 SMART Cyclin_C_2 181 311 IPR004367 -
Rops9g02182 355 Pfam Cyclin, C-terminal domain 181 291 IPR004367 -
Rops9g02182 355 Gene3D - 55 269 - -
Rops9g02182 355 FunFam CYCLIN D32 180 269 - -
Rops9g02182 355 SMART cyclin_7 84 172 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02182 Rops-Chr9 39938520 39940150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02182 3 274 Core Cell Cycle Gene Families AT4G34160 51.648 1.84e-95 287
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02182 9 39938520 39940150 Rops1g01818 1 37415035 37416545 ECH
Rops9g02182 9 39938520 39940150 Rops2g04491 2 82095073 82096888 ECH
Rops9g02182 9 39938520 39940150 Rops6g03152 6 55006850 55008410 ECH
Rops9g02182 9 39938520 39940150 Rops9g02182 9 39938520 39940150 ECH
Rops9g02182 9 39938520 39940150 Rops10g01122 10 23274087 23276015 PCT