Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02179 ATGGCTTCTGGTGGCAAAGAAATCGATCGGATCAAGGGTCCATGGAGCCCCGAAGAGGATGAAGCGTTAAGGAGGTTGGTTCAAATTCATGGCGCGAGGAATTGGTCTTTGATAAGCAAATCGATTCCTGGTCGATCGGGAAAATCTTGCCGTTTACGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGTCCATTCACGGCGGAGGAGGACAGTGCTATTATCAGAGCGCATGCCAGGTTCGGTAACAAGTGGGCCACCATAGCTCGTTTACTTAACGGGCGCACAGATAACGCCGTCAAGAATCACTGGAATTCCACTCTCAAGAGGAAATGTTCCGCCGTCACTGCCGTCGATTATCCACCACTTAAAAGATCAGCTAGTGTCGGTGCGGGTTCGGGTTCTTTTAACCCGAGTAGCCCATCCGGATCCGATTTGAGCGATCCGGGTTTGCCCGCCATGTCTTTTCCTTCGGCTCAGGTTAACGTTTCCAAACCTATTGCAATAGCCGAAACGGCGTCGTCAGCCACCGATCCAACTACTTTTCTCAGCTTATCACTTCCCGGGTTTGATTCCGGGTCCGGGTCGATCCAGAAGCCTCCACCACCATCACCGCCAGTGACGGTGGCGGTTCAGAGCAGTGAAGACCGTGGAAAACAGTTATTCAACGCGGAGTTCTTGGGGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGTCAGGGATGGAACAGAATGATTTGCGTGTTCAAACGGAAGCCATTGGAAACGCTGTGGTGAAGCGTTTGGGAATCAGCAACGTGAAGTAG 819 0.5165 MASGGKEIDRIKGPWSPEEDEALRRLVQIHGARNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDSAIIRAHARFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVTAVDYPPLKRSASVGAGSGSFNPSSPSGSDLSDPGLPAMSFPSAQVNVSKPIAIAETASSATDPTTFLSLSLPGFDSGSGSIQKPPPPSPPVTVAVQSSEDRGKQLFNAEFLGVMQEMIRKEVRSYMSGMEQNDLRVQTEAIGNAVVKRLGISNVK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02179 272 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Rops9g02179 272 PANTHER MYB PROTEIN-RELATED 12 180 - -
Rops9g02179 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Rops9g02179 272 FunFam MYB transcription factor 12 63 - -
Rops9g02179 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Rops9g02179 272 FunFam Transcription factor MYB44 66 112 - -
Rops9g02179 272 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Rops9g02179 272 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Rops9g02179 272 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Rops9g02179 272 CDD SANT 14 56 IPR001005 -
Rops9g02179 272 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Rops9g02179 272 MobiDBLite consensus disorder prediction 130 154 - -
Rops9g02179 272 SMART sant 63 111 IPR001005 -
Rops9g02179 272 SMART sant 11 60 IPR001005 -
Rops9g02179 272 CDD SANT 66 109 IPR001005 -
Rops9g02179 272 Gene3D - 65 126 - -
Rops9g02179 272 Gene3D - 11 63 - -
Rops9g02179 272 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02179 Rops-Chr9 39862056 39863217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02179 6 251 MYB Transcription Factor Family AT4G37260 50.865 1.62e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02179 Myb_DNA-binding 4.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02179 9 39862056 39863217 Rops1g01824 1 37461089 37462581 ECH
Rops9g02179 9 39862056 39863217 Rops2g04486 2 82014954 82016213 ECH
Rops9g02179 9 39862056 39863217 Rops9g02179 9 39862056 39863217 ECH
Rops9g02179 9 39862056 39863217 Rops10g00999 10 21460005 21461312 PCT