Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02158 ATGGCCTTAGAAGCTCTCAACTCACCCACCACCGCAACCCCATCATTCACCTTTGAAGACCCAACTCTCCGATACCCTGAACCATGGACAAAACGCAAGCGTTCCAAGCGTTCTAAAATGGACCAATCTTCATGTTCTGAAGAAGAGTACCTCGCTCTTTGCCTCATCATGTTAGCTCGCGGCGGCGCAACCGGTTCAAACCGCCACAGTCCCACTCCTCCACCGGCTACCGGTGAAGCAAGTCTCAGTTATAAATGTTCCGTTTGTAACAAAGCCTTCCCTTCTTACCAAGCACTTGGTGGACACAAGGCAAGTCACCGGAGACTCTCCGCCGCCGGTGAGGATCAATCCACCTCCTCAGCCACCGCCACCGCCGCAGCCACCAGTTCTGCCAACACCGCCTCCGCAAGTGGTGGCGGTAGGACCCACGAGTGTTCCATCTGTCACAAGTGTTTTCCCACAGGACAGGCCTTGGGTGGACACAAACGTTGTCACTACGAAGGTGGTGCTGGCAGTGCTGTAACCGCCTCTGAAGGTGTGGGGTCCACCAACACCGTTAACCACCGTGGCTTCGATCTCAACATCCCGGCTTTTCCGGAATTTTCTACCAAGGTTGGAGAAGACGAGGTTGAGAGTCCTCATCCATTGATGAAGAAGCCTCGTCTTTTCGTCGTACCCAAGATCGAAATCCCTCAAATTCAATGA 705 0.5362 MALEALNSPTTATPSFTFEDPTLRYPEPWTKRKRSKRSKMDQSSCSEEEYLALCLIMLARGGATGSNRHSPTPPPATGEASLSYKCSVCNKAFPSYQALGGHKASHRRLSAAGEDQSTSSATATAAATSSANTASASGGGRTHECSICHKCFPTGQALGGHKRCHYEGGAGSAVTASEGVGSTNTVNHRGFDLNIPAFPEFSTKVGEDEVESPHPLMKKPRLFVVPKIEIPQIQ* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02158 234 MobiDBLite consensus disorder prediction 1 42 - -
Rops9g02158 234 MobiDBLite consensus disorder prediction 111 126 - -
Rops9g02158 234 Gene3D Classic Zinc Finger 81 165 - -
Rops9g02158 234 SMART c2h2final6 143 165 IPR013087 -
Rops9g02158 234 SMART c2h2final6 84 106 IPR013087 -
Rops9g02158 234 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 199 IPR044653 GO:0003700
Rops9g02158 234 Pfam C2H2-type zinc finger 143 166 - -
Rops9g02158 234 Pfam C2H2-type zinc finger 84 108 - -
Rops9g02158 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Rops9g02158 234 SUPERFAMILY beta-beta-alpha zinc fingers 84 165 IPR036236 -
Rops9g02158 234 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Rops9g02158 234 MobiDBLite consensus disorder prediction 107 126 - -
Rops9g02158 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Rops9g02158 234 MobiDBLite consensus disorder prediction 1 18 - -
Rops9g02158 234 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02158 Rops-Chr9 39561040 39562036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02158 1 230 C2H2 Transcription Factor Family AT1G27730 54.918 5.09e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g02158 zf-C2H2_6 3e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02158 9 39561040 39562036 Rops10g01157 10 23721542 23722478 PCT