Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02154 ATGGAAGCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTAACAGAATGTTTGCTAGTGAGGAACATGATTACTCACTACAATTTCTTGGCCAAAGTTCACTTCTGCTTGGAGAAGATGATGGATTGAACATTGGAGGAACACAATCCACTTTTTACTCCTCTCCTGAAGCTGGTGAAAATGAGCATATGTTTTATTCTTTAGATGCTCAAAACTCAAACATTTCTCAAGAAAATAGTTATAGTAGAAATTGTAGTGATGATAATGTCTTCATTGCCCATCAGGGTCATACTAACTATTATTTTAGTTACCCTGATCATGTACTAGCAAATAACACTTGTCTATCCATGGATTTCTGCATGGATGAGAAAAATTTTGCCTCTTTTGTGCCATCTTTTACTGACATTGTAATGGGAGAGAATGTCAACTTGAATGAAGATGGTGAAAGATTGGAGAATTCTGATTACAGTCAAATAGAACCTCTTGTTTTTCCCACCAACCTCAAAAGGAAGCTTGATGTGCTAGAAGTGGAGGTTCCTGCTGAAGATAAAATTAACAACAGATCTGAGAATCAGAAGAAAAGACCTCGTGTGTTAAAAGATGGGCAAGGATGCATGAAGAATGCAAGGTCCAAGAAGAACCAGAAACATGCCAACAATGGGGATGAGGCAGAAGACACTAATACAGGATCAAATGGACAAAGCTCAAGTGGTAACATCTCAGAGGATGACAATGCTTCTCAGGAAACTAGTGGAGGAGCTACTTCAGGATCTAAATCTGCTCTCAACTCAAATGGGAAAACAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAGAGTCTATATGCAAGGAAAAGAAGAGAAAGAATAAATGAGAGACTAAGAATCCTACAGAATCTTGTCCCAAACGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAAGCAGTCAATTATGTGAAATTCTTGCAGCTTCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGACTTGACATTGGATTCAATCTCTCAACCTGA 1068 0.3858 MEAVGAFPDGEWDCFNRMFASEEHDYSLQFLGQSSLLLGEDDGLNIGGTQSTFYSSPEAGENEHMFYSLDAQNSNISQENSYSRNCSDDNVFIAHQGHTNYYFSYPDHVLANNTCLSMDFCMDEKNFASFVPSFTDIVMGENVNLNEDGERLENSDYSQIEPLVFPTNLKRKLDVLEVEVPAEDKINNRSENQKKRPRVLKDGQGCMKNARSKKNQKHANNGDEAEDTNTGSNGQSSSGNISEDDNASQETSGGATSGSKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGFNLST* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02154 355 FunFam Basic helix-loop-helix transcription factor 276 333 - -
Rops9g02154 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Rops9g02154 355 SMART finulus 281 330 IPR011598 GO:0046983
Rops9g02154 355 MobiDBLite consensus disorder prediction 186 202 - -
Rops9g02154 355 MobiDBLite consensus disorder prediction 186 287 - -
Rops9g02154 355 MobiDBLite consensus disorder prediction 225 279 - -
Rops9g02154 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 339 IPR036638 GO:0046983
Rops9g02154 355 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983
Rops9g02154 355 CDD bHLH_AtIND_like 276 338 - -
Rops9g02154 355 Gene3D - 274 332 IPR036638 GO:0046983
Rops9g02154 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02154 Rops-Chr9 39488482 39489975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02154 243 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 78.947 5.85e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g02154 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02154 9 39488482 39489975 Rops9g02154 9 39488482 39489975 ECH