Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02142 ATGTTGTGCACTTGTTCCGGGGAGCAATTCAAATTTGAAGAGGCACCACGGTCACCGGAGTCCCTGGCAACAAGGGATTTCTCTGCCAGTGGACTATCTTCAAGGACTGGGGATTGGGAGCCCAAATTTGATGAAACTCAAGTAGAAGATGTTGAATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATATCAAAGCGGGAACTTTGATGCTTCCCTTCGAGTGTTTCAAGGTATAGACATCAGGGCTTTGACCCCAAGGATGATCAGGGCTATAGCAGTAAGAACCAAGCAAAGAAAACCACGTTCCAAGGTGGATAATGTGCTTCCTAATTTGATGTCAATGCATTCAGTGAGCCTGCTCCTTGAGGCAATTTTTCTTAAAGCCAAATCCTTGGAGGAACTTGGGAGATACACTGAGGCAGCAAAGGAGTGCAGGATAATTGTGGATACAGTTGAATCTGCTCTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATAATAAGTTGAAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAAGCAGGCTTTCTAGATGAAGCTGTCACTGCTTATCGGCAGGCCCTGGTCAAGCCATGGAATTTGGAGACACGGAGGTTGGCTCGTTTACAAAAAGATTTAGCAACCACACTACTCTATGGTGGTGTCGAAGTAGACTTACCCTCTCAGTTGCAAGTGAAGGGTCCAACAACACCTATGAGTAGCATTGAAGAAGCAATACTTTTGCTATTAATACTTTCGGGAAAGATGGCACTTCAGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACATTTTCACTTTCAATTACTGGGATGTTTGAATCACTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATCTATGATCGATCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAGTGCGGCAGGACATGATGAAGCAGCATTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGCAAAGCACAGACCCCATTTTTCTTCATTTTTGTTTGGTGCAAAACTGTGTTCCCAAGATCCTAACCATGCTCATGAAGGCATTAAGTTTTCAAGGGAAGTTATAGATCTAGCCAAACATCAAAATGAGCATTTTCTGTGTCAAGGCCAAAAATTTCTTGGTGTTTGCCATGGGGCTGCAGGTAGGATATCTGTACTGGATTCTGAAAGAATTGTATTTCAAAGAGAGTCTTTGAACTTTCTAAATGAAGCTGCTCTAGGTGGAAATGATGATCCTGAAGTGACATTCAGCCTTGGACTCGAAAATGCAATGCAAAGGAATCTAGATGCAGCTTATTACAATATAATGATGTACTCAGACATGATGGTTGGAAGCTCTAGAAGAGGTTGGCAGCTATTAGCACTCGTAGTATCTGCACAGCAAAGGTTCAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGTAGGGAGCATAGATCAGTTAGAGCTACTAAGACTGAAAGCAGTACTTCAAATTGCTCAGCAGAAACCCAAGCAAGCAATAGAGACCTACAGAATCTTGTTAGCATTAATAGAAGCAAAAAAGGAGCTTTGGCTTCAAGCTAAGAACTTGGATCAAGCAAAAATATTCAGGAATGAGGCATTAACAGAACGGAAGATGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCAGATCTTAGTTCCTTTCTCGATGCAAAAGCTTGCGTTGACAAAGCTCAGTTGATAGATTTTTTTTCTGCCAGAAGTTGGCATATTACAGGGAAGTTGTTTGAAGCTCGATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAATCTCATTGTCAATAGAACCGGATTACATTCCAAGTATCATTTCTAGTGCAGAATTGTTGCTCAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGCTTTCTAATGAATGCTTTGCGGTTAGAACCCACAAACCATGATGCATGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAACTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 2148 0.4176 MLCTCSGEQFKFEEAPRSPESLATRDFSASGLSSRTGDWEPKFDETQVEDVESTLKEALSLNYEEARALLGRLEYQSGNFDASLRVFQGIDIRALTPRMIRAIAVRTKQRKPRSKVDNVLPNLMSMHSVSLLLEAIFLKAKSLEELGRYTEAAKECRIIVDTVESALPNGMPEGIGEDNKLKEMFHKALELLPNLWIKAGFLDEAVTAYRQALVKPWNLETRRLARLQKDLATTLLYGGVEVDLPSQLQVKGPTTPMSSIEEAILLLLILSGKMALQEIDWDAEIMDHLTFSLSITGMFESLADHVEQILPGIYDRSERWYFLALCYSAAGHDEAALNLLRKACGSSEAKHRPHFSSFLFGAKLCSQDPNHAHEGIKFSREVIDLAKHQNEHFLCQGQKFLGVCHGAAGRISVLDSERIVFQRESLNFLNEAALGGNDDPEVTFSLGLENAMQRNLDAAYYNIMMYSDMMVGSSRRGWQLLALVVSAQQRFKDAETIVDFALDEVGSIDQLELLRLKAVLQIAQQKPKQAIETYRILLALIEAKKELWLQAKNLDQAKIFRNEALTERKMEMEAWQDLATIYADLSSFLDAKACVDKAQLIDFFSARSWHITGKLFEARSLYKEAFVSFSISLSIEPDYIPSIISSAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKFE* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02142 715 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Rops9g02142 715 Gene3D Tetratricopeptide repeat domain 543 710 IPR011990 GO:0005515
Rops9g02142 715 MobiDBLite consensus disorder prediction 15 41 - -
Rops9g02142 715 Gene3D Tetratricopeptide repeat domain 32 240 IPR011990 GO:0005515
Rops9g02142 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Rops9g02142 715 SMART tpr_5 133 166 IPR019734 GO:0005515
Rops9g02142 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Rops9g02142 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Rops9g02142 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Rops9g02142 715 SMART tpr_5 572 605 IPR019734 GO:0005515
Rops9g02142 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Rops9g02142 715 SUPERFAMILY TPR-like 194 601 IPR011990 GO:0005515
Rops9g02142 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Rops9g02142 715 SUPERFAMILY TPR-like 548 706 IPR011990 GO:0005515
Rops9g02142 715 Coils Coil 56 76 - -
Rops9g02142 715 Gene3D Tetratricopeptide repeat domain 260 540 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02142 Rops-Chr9 39340523 39345171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02142 1 714 Calmodulin-binding Proteins AT1G27460 58.078 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02142 9 39340523 39345171 Rops9g02142 9 39340523 39345171 ECH
Rops9g02142 9 39340523 39345171 Rops10g01167 10 23856641 23860607 PCT