Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02137 ATGGCATTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGATAAAACTGTTTATCTGGTTGATAAGTTGACTGCTGATAACCGAGTGTTCCACAAAGCCTGCTTCAGATGCCATCACTGCAAAGGAACCCTTAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTTTGTACTGCAAGCCACACTTTGACCAACTGTTCAAAAGAACTGGTAGCCTTGAGAAAAGCTTTGAAGGGACACCAAAAATTGCCAAACCAGAAAGAATTGGTGATAATGAGAAACCTGCAGCTGCCAAAGTCTCAAGCATGTTTGGTGGAACCAGGGATAAATGTCTTGGTTGCCAGAAAACGGTGTATCCCACTGAGAAGGTTACTGTGAATGGAACTCCTTACCATAAGAGTTGCTTCAAATGCTGCCATGGAGGGTGCACTATTAGTCCTTCCAATTACATAGCACATGAGGGAAAACTCTACTGCAAGCACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAACTTGAAGGTGACCATGAGAAGAGTGCAATGCAGGGAAAAATCAATGGTGAAGAAGTTGCAGCCGAGACATGA 594 0.4394 MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPERIGDNEKPAAAKVSSMFGGTRDKCLGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKSAMQGKINGEEVAAET* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02137 197 SMART lim_4 9 61 IPR001781 -
Rops9g02137 197 SMART lim_4 109 161 IPR001781 -
Rops9g02137 197 MobiDBLite consensus disorder prediction 178 197 - -
Rops9g02137 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Rops9g02137 197 PANTHER OS06G0237300 PROTEIN 4 95 - -
Rops9g02137 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Rops9g02137 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Rops9g02137 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Rops9g02137 197 Pfam LIM domain 110 164 IPR001781 -
Rops9g02137 197 Pfam LIM domain 10 64 IPR001781 -
Rops9g02137 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Rops9g02137 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Rops9g02137 197 CDD LIM2_SF3 110 170 - -
Rops9g02137 197 FunFam LIM domain and actin-binding 1 104 174 - -
Rops9g02137 197 CDD LIM1_SF3 6 68 - -
Rops9g02137 197 FunFam LIM domain and actin-binding 1 4 74 - -
Rops9g02137 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Rops9g02137 197 Gene3D Cysteine Rich Protein 105 174 - -
Rops9g02137 197 Gene3D Cysteine Rich Protein 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02137 Rops-Chr9 39323235 39325172 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Rops9g02137 LIM 4.6e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02137 9 39323235 39325172 Rops9g02137 9 39323235 39325172 ECH
Rops9g02137 9 39323235 39325172 Rops10g01172 10 23891749 23893872 PCT