Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03559 ATGTCACCAAATTGTCCAAGGTGTGGTTCTTCCAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAACCAAGGTACTTTTGCAAGGGTTGCAGAAGGTACTGGACCAAAGGAGGATCCCTACGCAATGTTCCTGTTGGTGGTGGCTACCGGAAAAGTAGACGTGGTAATAAAACATTAAGACAATCCATTGAAGCAATTAAGCATTCTGATGATGTTAGAAAGTCTTCATCTTCTAGCCCTTCTGAAGGTCCAAATATTGATCTTGCACAAGTGTATGCAAGTTTTCTTAATCAAAAGCCAGATTCAAGAGCAGGCATTGAGAAGCCAGATCAAGTGCAAACAGTTTTGTATGCTTCTCCAGAGAATTTAAGCCTATCTAACACTGATTTTGGCCAAAGTACTTTACCTGAAGAACTTGGTCTCAATGGATGTTTGCATCTTCATGAACAATCCACAGAACCCCATTTCAGTGAGGAGGGTAATGTCCAAATGTATTTTTGCGGGTTCAACTCTATCCAAAAGCATCAAGGGGATAATAGTAGTAGTCATGGCAATAAAAATTTTGAGTTGCCACCTTTGCCAGGTGAAGAGGCACTGCCCTCACATGATATGTGGATATGGTCTGATTCTGAGATGATGATAAACCATGCCTTGCTAGCCACCCAACCACCCCATTTTGGACCTGAAGCTCATAATGAAGAATTGTTAATGGGTAATTGGAGCCCCTTTGATTTGTCATGGGATGCTTCTATTTCCGGGCCTTCATAA 777 0.4144 MSPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPVGGGYRKSRRGNKTLRQSIEAIKHSDDVRKSSSSSPSEGPNIDLAQVYASFLNQKPDSRAGIEKPDQVQTVLYASPENLSLSNTDFGQSTLPEELGLNGCLHLHEQSTEPHFSEEGNVQMYFCGFNSIQKHQGDNSSSHGNKNFELPPLPGEEALPSHDMWIWSDSEMMINHALLATQPPHFGPEAHNEELLMGNWSPFDLSWDASISGPS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03559 258 ProSitePatterns Zinc finger Dof-type signature. 5 41 IPR003851 GO:0003677|GO:0006355
Rops8g03559 258 Pfam Dof domain, zinc finger 4 57 IPR003851 GO:0003677|GO:0006355
Rops8g03559 258 MobiDBLite consensus disorder prediction 179 198 - -
Rops8g03559 258 ProSiteProfiles Zinc finger Dof-type profile. 3 57 IPR003851 GO:0003677|GO:0006355
Rops8g03559 258 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 154 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03559 Rops-Chr8 75607562 75608338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03559 1 252 C2C2-Dof Transcription Factor Family AT3G52440 43.273 1.22e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops8g03559 zf-Dof 3.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03559 - - aprc:113871380 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03559 8 75607562 75608338 Rops8g03559 8 75607562 75608338 ECH
Rops8g03559 8 75607562 75608338 Rops6g00782 6 19884025 19884900 PCT