Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01679 ATGGTTTATACTTCCCTCCCAGCATATATGGATCCATCCAACTGGCAGCATCAGCAACCAAATCATCAAGGGGGAAGCAACACCGGAGCCAGCTCCCCTCTTATTCATCCACCACCACCGCCACCATCACAGCCTCATGGAGGCTCGATTCGACCGGGTTCGTTGGCGGATAGGGCTAGAATGGCCAACATACCTATGCAAGAAGCTCCACAAAAATGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCACACAGCCCCGCCACTTTTGCAAGGCCTGTAAAAGGTACTGGACAAGAGGCGGCGCCTTAAGGAACGTCCCCGTCGGTGGTGGCTGCCGGAGAAATAAGAAAACCAGATCAACCACCACCAACACCTCCTCCAGGTCCGATCGCCAAACCGGCAGCACTGCCACCTCCTCCGCTGATGTGGAAGCCCCACTTCAACCTCCTCAGAGATTCACTGCCCCATTGCATCATCAACTTGGTGATCATCATCACCTTGGAGAGATAGGGTTAAACTATGGGTTGATTTCAGGTCCAATGGGAGGAGTTGGAGAGTTGAATTTCCACATGGGAAGTGCTTTCGGTGGTTTGGAAAATTGGAGGGTGCCACAAACTCATCAATTTCCCTTTTTGTCTGGTTTGGAAGCTTCTTCTTCACATGGGTTGTTGTACCCTTTTGAAGGTGGTGGTGGTAGTAGTGGTAATAATACTACTCAGGTATCAACTTCTCAAATTGCTTCAGCTAAAATGGAAGACAATTATCATCAGCAACTTGGTTTGTCTAGACAGTTCTTGGGAATCAATAATAGTAATAATAATAACAATAATAATCCTACTAGTGAACAATATTGGAGTGCTAGTGGTGGTGGTGCCACTTCAGCTTGGACAGATCTTTCTGCTTTTAACTCTACTAGCAATCCACTATAG 954 0.4696 MVYTSLPAYMDPSNWQHQQPNHQGGSNTGASSPLIHPPPPPPSQPHGGSIRPGSLADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLTQPRHFCKACKRYWTRGGALRNVPVGGGCRRNKKTRSTTTNTSSRSDRQTGSTATSSADVEAPLQPPQRFTAPLHHQLGDHHHLGEIGLNYGLISGPMGGVGELNFHMGSAFGGLENWRVPQTHQFPFLSGLEASSSHGLLYPFEGGGGSSGNNTTQVSTSQIASAKMEDNYHQQLGLSRQFLGINNSNNNNNNNPTSEQYWSASGGGATSAWTDLSAFNSTSNPL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01679 317 MobiDBLite consensus disorder prediction 276 297 - -
Rops8g01679 317 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Rops8g01679 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 292 IPR045174 GO:0003700|GO:0006355
Rops8g01679 317 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Rops8g01679 317 MobiDBLite consensus disorder prediction 33 47 - -
Rops8g01679 317 MobiDBLite consensus disorder prediction 1 54 - -
Rops8g01679 317 MobiDBLite consensus disorder prediction 123 153 - -
Rops8g01679 317 MobiDBLite consensus disorder prediction 112 154 - -
Rops8g01679 317 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Rops8g01679 317 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01679 Rops-Chr8 37562615 37564152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01679 1 313 C2C2-Dof Transcription Factor Family AT2G37590 37.190 3.96e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops8g01679 zf-Dof 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01679 - - gmx:100796820 399.823