Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00666 ATGTTGGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATTCCGGTGCCGGATATCCCGGTCGGATCCGGTGAACCCGCCGGAGATCGGGCTTCATCTTCTGGGGATGTTGTTTATGAGAGTGTTGATCAGAATCATGCTTCTTCTACCAACTCTTCCAACAGGGATGCACAAGAGCAAGAGGTTGAGAAGGACATATCAGGAGATAAACGAACTGATGATAAGAAGGAAGATGGAGCCCCCACCCAATCACCAGAAGAGTTCACCAATCCAGATACTGCCTCTGGGACTGGTGAAGAATCTGTTACCCTGTCCTCTGAGAGGGAGGCTAAAACTTCCAAGACTGAAGAACAAGGTGAGACAAGTAATTTGCAGGATAAGAACCTTAAGAAACCAGACAAAGTACTGCCTTGTCCCCGTTGTAATAGCATGGACACCAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCTCGCCACTTCTGCAAGAATTGCCAGAGATACTGGACTTCCGGTGGAACCATAAGGAATGTTCCTGTAGGTGCCGGTCGCAGGAAGAACAAGAACTCTTCTTCTCATTATCGCCAGATAATTGTACCTGAAGCAGCACTCCAGAATACTCAAACGGATTTTTCAAATGGATCCCATCATCCTTCGTTGAAGTGCAATGGGACAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCAATGGCATCTGTTTACCTTGCTGATAAAACAATGCACAATTACACAATAAATGGATTTCATAAACCTGAAGAACTAAGAATTCCTGTTCCACATGCTAGTGGAGAAAAAGGGGATGATCAATCTGATAAATCTTCTGTTACCTCTACAAAATCAATGGAAGGTGCAATTACCAATGGTTCCCAAGAACAAGCTATGCAGAATTGTCAAAGTTTCCCACCACAAGTTTCCTACTTTCCTGGGACCCCTTGGCCTTTCCCATGGAATCCAGTGCAGTGGAGCTCTCCGGTACCACCACCCGCTTTTTGCCCACCAGGATTTAACATGCCATTCTATCCTGCAACACCTTATTGGGGTTGTACTGTGCCAGGTGCATGGAACATTCCATGGTTAGCACAACCATCATCACCAAATGGTGCAGCCCCTAACTCTGGCCCAAACTCCCCAACCTTGGGTAAACATTCAAGGGAAGACAACTTTCTCAAATCAAATGAGTCAGGTAGCGAGGATGGGCATAGCAAAGAAGATAACAAAGTGTGGGTTCCAAAAACCTTGAGGATTGATGATTCAGGAGAAGCAGCAAAAAGCTCTATATTGACAATGCTTGGGATAAAAAATGATAAGGCTGACTCAATTCCTGGGGGAGGAGGAGTCTTTAAAGCTTTCCCTTCAAAGTGTGATGATAAAAATCACTCAATGCAAGCCTCACCGGTCTTGCAGGCTAATCCAGCAGCATTGTCTAGCCAACTGAAGAAATGCCACATTGGTGAAGAAGCATTGTGTTGGCATAGCATCTCCCCTTTCTTAGAATGTAACCTTATACTTTTCATTGCCTCAGCCAGTCTACCTTGGTTTATAAATAGTTACTACTGTGTATTCTTCATTTATTATTTTGGTCTCTATGTTCTTTCTCTTTGTTTAAGACACTATTCTCCTCATCTCACCATGGCGCTTGTCATACCTTTGAAGCATCCCGGCTCAAGAGCTACCCAGCAGAGCAATTGCAGGAGCAAGTGA 1737 0.445 MLEAKDPAIKLFGKTIPVPDIPVGSGEPAGDRASSSGDVVYESVDQNHASSTNSSNRDAQEQEVEKDISGDKRTDDKKEDGAPTQSPEEFTNPDTASGTGEESVTLSSEREAKTSKTEEQGETSNLQDKNLKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTSGGTIRNVPVGAGRRKNKNSSSHYRQIIVPEAALQNTQTDFSNGSHHPSLKCNGTVLTFGSDTPLCESMASVYLADKTMHNYTINGFHKPEELRIPVPHASGEKGDDQSDKSSVTSTKSMEGAITNGSQEQAMQNCQSFPPQVSYFPGTPWPFPWNPVQWSSPVPPPAFCPPGFNMPFYPATPYWGCTVPGAWNIPWLAQPSSPNGAAPNSGPNSPTLGKHSREDNFLKSNESGSEDGHSKEDNKVWVPKTLRIDDSGEAAKSSILTMLGIKNDKADSIPGGGGVFKAFPSKCDDKNHSMQASPVLQANPAALSSQLKKCHIGEEALCWHSISPFLECNLILFIASASLPWFINSYYCVFFIYYFGLYVLSLCLRHYSPHLTMALVIPLKHPGSRATQQSNCRSK* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00666 578 MobiDBLite consensus disorder prediction 1 138 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 270 284 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 59 84 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 376 417 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 270 292 - -
Rops8g00666 578 ProSitePatterns Zinc finger Dof-type signature. 140 176 IPR003851 GO:0003677|GO:0006355
Rops8g00666 578 MobiDBLite consensus disorder prediction 39 58 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 85 105 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 376 394 - -
Rops8g00666 578 ProSiteProfiles Zinc finger Dof-type profile. 138 192 IPR003851 GO:0003677|GO:0006355
Rops8g00666 578 PANTHER CYCLIC DOF FACTOR 2 4 490 IPR045174 GO:0003700|GO:0006355
Rops8g00666 578 Pfam Dof domain, zinc finger 135 192 IPR003851 GO:0003677|GO:0006355
Rops8g00666 578 MobiDBLite consensus disorder prediction 395 417 - -
Rops8g00666 578 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00666 Rops-Chr8 13271862 13275577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00666 6 487 C2C2-Dof Transcription Factor Family AT5G39660 41.634 1.34e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops8g00666 zf-Dof 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00666 - - gmx:100788247 794.653