Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00312 ATGTTCCCTTCCAGTCACAGCTCCTCAGGCCCTTACCCTTGTTTCCCTTCATCTTACCCTTCTTTCACTTTCCTTAACCCTGAAAATGCTTCAGCAAACAACACCTTTCTTCATGATCCACTTTCTGTTCCCTACATACCAACTCATCAGGAAACACTAACCAATTGGGCAGTTGCAGACTGTGCTGCAATGCTCAAACAAGATCTAAGTGGTGTTCATTATGGCATCACCAAGAAACCAGCAAAGAAACCAGTTAAGAAAGATAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGGGACCGAAGGGTGAGATTGTCCATTGACATTGCACGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACTCTTGAGTGGCTCTTTACCAAGTCCAAGAAAGAAATTGAAGAGTTAACTCGAAGCAAGAACAGTAGCAGTGGTGCTGCTGATGATGATGATAGCTTCTCCTTCTACTCCTCCTCTTCTGAGGGTGAAGTGGTTTCTGTGATCAACCAAGACATAGACCTACAACAACAACAAAGGGTAGAGAGGAAGTTGAAAAGGGCACAGAAAGAACCTGCTTGTGTTCAAGCAAAAATGAAGGAATCAAGGGAAAAAGCAAGGGCTAGAGCAAGGGAAAGGACTAATAACAAGATGAGCAACACAAGCAGCATTGAGAAGGTGCAAGACTTGAAGAAAAAGTGCCCTGCAACTGAAAATCCTCAAATCATGGTTCTGCCTGAGGACACTGGAAAATCACCTAAGCTGTTTCAACCTCATCCTCACCTTGTGGGTAGTGAATTGCCTAGAGATGATGACTTCAATGTTGTTGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCAATCTTTGATGTCTTCTTCTCATCACCAAAACACTATGATACCTAAGGAAGCAAGTTTTAACAACAGTGACTGCCAATCCCTCCCCATGTCTCCAAATTGGGAAGCTAATGGTGCCACAGGACGCTCAAACTTTTGTGCAATAGCCCTATCTACTGGGCTTCAAATCTTTGGAAAATCTTGGGAGGAGTGCACCAGTCCCCATCTATACTAA 1095 0.4365 MFPSSHSSSGPYPCFPSSYPSFTFLNPENASANNTFLHDPLSVPYIPTHQETLTNWAVADCAAMLKQDLSGVHYGITKKPAKKPVKKDRHSKIHTSQGLRDRRVRLSIDIARKFFDLQDMLGFDKASNTLEWLFTKSKKEIEELTRSKNSSSGAADDDDSFSFYSSSSEGEVVSVINQDIDLQQQQRVERKLKRAQKEPACVQAKMKESREKARARARERTNNKMSNTSSIEKVQDLKKKCPATENPQIMVLPEDTGKSPKLFQPHPHLVGSELPRDDDFNVVEESIVIKRKLKQSLMSSSHHQNTMIPKEASFNNSDCQSLPMSPNWEANGATGRSNFCAIALSTGLQIFGKSWEECTSPHLY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00312 364 Pfam TCP family transcription factor 85 227 IPR017887 -
Rops8g00312 364 ProSiteProfiles TCP domain profile. 86 144 IPR017887 -
Rops8g00312 364 MobiDBLite consensus disorder prediction 216 237 - -
Rops8g00312 364 ProSiteProfiles R domain profile. 207 224 IPR017888 -
Rops8g00312 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 76 316 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00312 Rops-Chr8 6085571 6087312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00312 51 226 TCP Transcription Factor Family AT1G67260 39.583 3.50e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops8g00312 TCP 2.8e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00312 8 6085571 6087312 Rops2g03737 2 69139792 69141144 ECH
Rops8g00312 8 6085571 6087312 Rops8g00312 8 6085571 6087312 ECH
Rops10g00376 10 10516564 10518171 Rops8g00312 8 6085571 6087312 ECH