Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00215 ATGGTCTTCCCGTCTCTTCCAATCTATCTTGATCCACCCAACTGGTCACAACAGCAACCTAATCAGCAAACCCAGAATCCACAGGCACCACCACCTTCAACGGTAGCCGTTGGAGGAGGTGGTGGCTTCCAAGGATCTATAAGACCAGGATCAATGGCTGATAGAGCTAGGTTGGCAAAGATACACCAACCTGATGCAGCACTCAAATGTCCAAGATGTGAATCTACAAACACAAAGTTCTGTTACTACAACAACTATAACCTTTCACAACCTAGACACTTTTGCAAGACTTGTCGTCGTTACTGGACCAGGGGAGGTGCACTGAGAAACGTTCCTGTTGGAGGTGGATGTAGAAGGAATAAAAGAAGCAAAGGAAGCAACAAATCAAAGTCTCCTATGAAAGCTGATCGCCAAGGTGTTGCTGCTGCTTCAGCTTCTTCTGGTTCTGCAAGTGCAAATTCTGATGTGATGATGGGTCATTTGCCAACCCCAGCAGCACCAACTCAATTCTCATTCTTGCCTTCTTTGCATCATTTTAGTAATGACTATGTTTCTGGGGGTGTTGGGTCTCATTTTGGGGCATCATTGATGGCTAGAAATGGCAACAACAACACTAGTTCTGGTAGTGATATTGCTGAGTTTCAAATTGGTAACAATGGTGAACAATGGAGGTTGCCAAATCTACAACAAGTTCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCATCAACAGTTCCCTTTCTTGACTAATTTGGAACCACAAATTGGGTTGTTTCAGTTTGGTGGAGAACATAATACTGAATATGCAAGGGATGGAGGCAGGTTTAATCGTTCTAAGGTAATAGATTCTTCTAGTGTAAGTGGAATAATGCCTCAGCTTAACACGATAAAAATGGAGGGAAATCATGGGTTGAGTTTGCCAAAAAATCTCTTGAGTGGTTCAGGAAATGATCTATTTTGGAATGGAAGTGGCAATGCATGGAGCGAAGTTCCTGGTTTCACTCCATAA 1014 0.4339 MVFPSLPIYLDPPNWSQQQPNQQTQNPQAPPPSTVAVGGGGGFQGSIRPGSMADRARLAKIHQPDAALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSNKSKSPMKADRQGVAAASASSGSASANSDVMMGHLPTPAAPTQFSFLPSLHHFSNDYVSGGVGSHFGASLMARNGNNNTSSGSDIAEFQIGNNGEQWRLPNLQQVHHHHHQQQQQQQHQQFPFLTNLEPQIGLFQFGGEHNTEYARDGGRFNRSKVIDSSSVSGIMPQLNTIKMEGNHGLSLPKNLLSGSGNDLFWNGSGNAWSEVPGFTP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00215 337 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Rops8g00215 337 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Rops8g00215 337 MobiDBLite consensus disorder prediction 11 32 - -
Rops8g00215 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 247 IPR045174 GO:0003700|GO:0006355
Rops8g00215 337 MobiDBLite consensus disorder prediction 112 155 - -
Rops8g00215 337 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Rops8g00215 337 MobiDBLite consensus disorder prediction 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00215 Rops-Chr8 4602423 4604368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00215 16 252 C2C2-Dof Transcription Factor Family AT3G55370 43.460 1.29e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops8g00215 zf-Dof 7.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00215 - - lja:Lj1g3v3220250.1 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00215 8 4602423 4604368 Rops8g00215 8 4602423 4604368 ECH