Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02540 ATGTGTGGTGGTCCAGAGAAATCAAAATCTCGTTCAACTTCAACTTCAACTTCATCTGCTGTTGAAGGTTCAACTAATGCCAAAGACATGAAAAATGTAACTGTTCATACTGAAGATTCTTTTTCCAGCTTACTTGAACTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGCTTTAGATAGGGATGCTTCTCTAATAAATGAAGTGGGCCTTTGGTATGCCCGTCAAAATGGATCCAAACAAATTGTTCTTGAGCATAGAACCCCTTTAATGGTTGCTGCTACCTATGGGAGTATGGATGTTCTAAAGCTTATACTTTCATATCCAGAGGCTGATGTAAATTTCTCTTGTGGGGCTGATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGTTCTGTTAATGCAGTTGATGTTGTAAAGCTACTTTTATCAGCTGGTGCTGATGTCAGTTGTGTGGATGCTAATGGAAACCGTCCTGTTAATGTTATTGTTGTTCCTCCTAAGCTCCAATGTATGAAAACAATTCTTGAAGAACTTCTTTCAGATAGTGCTTCCGATGGGTCCATTGATGACTGCTCTCTTCCAATATCTGTTAATTCATCAAGTCCTGGTTCAGCTGTTCATTCATCACCACTTGAACATGGGTTGCCATCCTCTCCCATGGCTTCAAAGTTTACTGACACAGCTGTTAATTCTATATCAGAGAAGAAAGAATATCCAAATGATCCATCGCTTCCTGATATAAAAAACAGTGTATATGCGACAGATGAGTTTCGCATGTTTTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTACCATGTCCTGATTTTAGAAAGGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCCCATGGAGTATTTGAGTGCTGGCTACACCCAGCCCAGTATCGGACAAGGTTATGCAAAGATGGTACTAGTTGTAATAGAAGGGTATGTTTTTTTGCTCATACAGCTGAAGAGCTGCGTCCGTTGTATGTATCCACTGGTTCTGCTGTCCCTTCACCTCGTTCATCTGCCTCTGCTCCTAATGTCATGGATATGGCTGCTGCTATGAGCCTTTTTCCTGGTTCACCATCATCAATCTCTTCTATGTCTCCATCTCCCTTTGCACAGCCAATGTCTCCATCTGCAAATGGCATCACTCATTCATCTACTGCTTGGCCACAGCCAAATGTGCCAGCTCTTTATTTACCAGGAAGCAATATTCAAACTAGTCGATTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCTGAAGGCATAAATGTGTTGCAAGATTTTGATGGCCAGCAACACCTTTTGAATGACTTGGGCTGTTTCTCACAGCCCCACCCTGGTGCTGTTTCAGTGAATCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCAGAAATTTTATCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCGACACACAAATCAGCCGTTCTCAATCAGTTTCAACAGCTTCAAAGTTCATTATCTCCCATCAATACAAATGTCTTGTCTCCTAAGAATGTTGAGCATCCTCTATTGCAGGCTTCATTTGGTGTCTCTTCTCCTGGAAGAATGTCACCAAGAAGTGTGGAAACCCTCTCTCCAATGAGCTCTCAATTATCAGCATTTGCTCAGCGTGAGAAACTACAGCAACAACTACGGAGTCTTAGTTCAAGGGACCTTGGTGCTAACAATCCTGCCTCGGTAGTTGGATCCCCTGTTAACTCCTGGTCTAAGTGGGGATCTCCTAATGGAAAAGCTGATTGGTCAGTAAATGGAAATGAGCTAGGTCGGTTGCAAAGATCTTCCTCATTCGAGCTTGGAAACAATGGGGAAGAGCCTGATCTATCCTGGGTCCAATCCCTTGTCAAGGAATCCCCACCTGAAAGAAAAGAGAAGTTGGCAGGTTCTGGTCCTATTGCATCTGCTGATGGACTGAATTCCAATCCTCAAATGGAGTCTGTTGATCATTCTGTTTTAGGAACTTGGCTTGAGCAAATGCAGCTGGACCAGCTTGTAGTCTAG 2172 0.4323 MCGGPEKSKSRSTSTSTSSAVEGSTNAKDMKNVTVHTEDSFSSLLELASNNDFEDFKLALDRDASLINEVGLWYARQNGSKQIVLEHRTPLMVAATYGSMDVLKLILSYPEADVNFSCGADKSTALHCAASGGSVNAVDVVKLLLSAGADVSCVDANGNRPVNVIVVPPKLQCMKTILEELLSDSASDGSIDDCSLPISVNSSSPGSAVHSSPLEHGLPSSPMASKFTDTAVNSISEKKEYPNDPSLPDIKNSVYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSANGITHSSTAWPQPNVPALYLPGSNIQTSRLRSSLSARDMPPEGINVLQDFDGQQHLLNDLGCFSQPHPGAVSVNRSGRSKTLTPSNLDDLFSAEILSPRYSDPAAASVFSPTHKSAVLNQFQQLQSSLSPINTNVLSPKNVEHPLLQASFGVSSPGRMSPRSVETLSPMSSQLSAFAQREKLQQQLRSLSSRDLGANNPASVVGSPVNSWSKWGSPNGKADWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPPERKEKLAGSGPIASADGLNSNPQMESVDHSVLGTWLEQMQLDQLVV* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02540 723 ProSiteProfiles Ankyrin repeat region circular profile. 121 155 - -
Rops7g02540 723 MobiDBLite consensus disorder prediction 403 422 - -
Rops7g02540 723 MobiDBLite consensus disorder prediction 602 637 - -
Rops7g02540 723 PRINTS Ankyrin repeat signature 140 154 IPR002110 GO:0005515
Rops7g02540 723 PRINTS Ankyrin repeat signature 87 102 IPR002110 GO:0005515
Rops7g02540 723 MobiDBLite consensus disorder prediction 672 702 - -
Rops7g02540 723 MobiDBLite consensus disorder prediction 7 31 - -
Rops7g02540 723 Pfam Ankyrin repeats (3 copies) 76 153 IPR002110 GO:0005515
Rops7g02540 723 Gene3D - 25 201 IPR036770 -
Rops7g02540 723 MobiDBLite consensus disorder prediction 1 31 - -
Rops7g02540 723 SMART c3hfinal6 299 325 IPR000571 GO:0046872
Rops7g02540 723 SMART c3hfinal6 334 357 IPR000571 GO:0046872
Rops7g02540 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 324 IPR000571 GO:0046872
Rops7g02540 723 SUPERFAMILY Ankyrin repeat 33 174 IPR036770 -
Rops7g02540 723 ProSiteProfiles Zinc finger C3H1-type profile. 304 326 IPR000571 GO:0046872
Rops7g02540 723 ProSiteProfiles Ankyrin repeat profile. 121 156 IPR002110 GO:0005515
Rops7g02540 723 PANTHER UNKEMPT FAMILY MEMBER 46 675 IPR045234 -
Rops7g02540 723 SMART ANK_2a 121 153 IPR002110 GO:0005515
Rops7g02540 723 SMART ANK_2a 86 116 IPR002110 GO:0005515
Rops7g02540 723 FunFam Zinc finger CCCH domain-containing protein 66 257 325 - -
Rops7g02540 723 Gene3D - 299 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02540 Rops-Chr7 47421619 47425900 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops7g02540 Ank_2 1.8e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g02540 7 47421619 47425900 Rops3g02715 3 57551527 57555518 ECH
Rops7g02540 7 47421619 47425900 Rops7g02540 7 47421619 47425900 ECH
Rops3g02715 3 57551527 57555518 Rops7g02540 7 47421619 47425900 PCT