Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01953 ATGAGTGTTATGTATAGTCCAATTCTCAAGTACTCAGATGGTGAGCTGAGGAGAAACCAAGAAATGGATTCAAGTATTGGATATCCACAACAACAGTGTCACCAGTACAATTCTGGAATAATGAGGTATCGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTATTGAAAACAACAACACTCATGGCTGTGTCAATGAGGAAGATTTTACAAGTGAGGATCATCATCAGAGTTATTTTCCATCCACAAGTTCAGAAATGGAGACCATTTTTTCCAACAATGGTTGGAGCAATTCAGAACCTTTGCAAGAGTTTGGAGGCAAGTCTGTGAAGCAGGAAGAAGAGGAATCTGTTCCACAGAATGGCTACTCTTATGGAGGGTCTCAGTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATGGTTCTTCCAGTGCTACTGGCAATGCTTTTCATGGCTCTTTTGGTGTAGTGAACTCCATGGCTTCAGAGAATTTTACTCAATCTAAAATGAGTGTCAGAAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATGAAAATGGTCTAGCAGCATTGAGAGAGATAGGAAGCTTTAAAGCCAGTGATGTCTCAAATGGACTGGCTACTGCATCAACTAGTGGGTTTCATGGTACTCTCACCTTCTCATCTAGGCCATCCTCTTGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAAATGAAAGCCTAGAAGCAAACTGTGACCAAAGTAACCTGGTAAATGACAATGGCAACTCCAAGTGTTACATGCCTAGCTTCACCAATGAATTCTGGGACAATTCTGCATTCAATGCCCAAAAAACAGAAAGTGAAGATGAAATCATGTTTTCTACTTCAAATGGTTTGGAATCTCAGGAAGCAGAGTTGTGCTATGAAAATCTTGGTTTGACTCAGCATTTGAGTTTGCCTAGTTCCTCCACTAAGATGGCATCCATAGAGAAGTTTCTTCAAGTTCAAGGATCTGTTCCTTGCAAAATTCGAGCTAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACTCGGATTAGTGAAAGAATCAAGAAACTGGAAGGCCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTTCAAGAACAAGTTAAGATACTCACGGATTGTAGGGAAAAATGCAAATGTCCAAGTAATGAGAAGCAATACTCTAGACCTTGTACCTGA 1293 0.4091 MSVMYSPILKYSDGELRRNQEMDSSIGYPQQQCHQYNSGIMRYRSAPSSLLASLIENNNTHGCVNEEDFTSEDHHQSYFPSTSSEMETIFSNNGWSNSEPLQEFGGKSVKQEEEESVPQNGYSYGGSQLIYQSQQIQGLPNGSSSATGNAFHGSFGVVNSMASENFTQSKMSVRNCSNLIRQKSSPAGFFSNENGLAALREIGSFKASDVSNGLATASTSGFHGTLTFSSRPSSCLKRMPQIAENGNESLEANCDQSNLVNDNGNSKCYMPSFTNEFWDNSAFNAQKTESEDEIMFSTSNGLESQEAELCYENLGLTQHLSLPSSSTKMASIEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLEGLFPKSDKQTSTADMLDLAVEYIKDLQEQVKILTDCREKCKCPSNEKQYSRPCT* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01953 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 418 IPR036638 GO:0046983
Rops7g01953 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 402 IPR011598 GO:0046983
Rops7g01953 430 Pfam Helix-loop-helix DNA-binding domain 358 403 IPR011598 GO:0046983
Rops7g01953 430 FunFam Transcription factor bHLH130 family 353 422 - -
Rops7g01953 430 Gene3D - 354 424 IPR036638 GO:0046983
Rops7g01953 430 SMART finulus 358 408 IPR011598 GO:0046983
Rops7g01953 430 CDD bHLH_AtbHLH_like 357 409 IPR045239 -
Rops7g01953 430 MobiDBLite consensus disorder prediction 94 120 - -
Rops7g01953 430 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01953 Rops-Chr7 32371269 32374574 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g01953 HLH 2e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01953 7 32371269 32374574 Rops3g02747 3 58592478 58611296 ECH
Rops7g01953 7 32371269 32374574 Rops7g01953 7 32371269 32374574 ECH