Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01822 ATGGGCAACCTCTTTGGTAGAAAAAGAATTCGTGACCCTCAAATTTCTAGACATGGTAAAGGAAGAAGAGGTGTTGGAATCTCTTCCCCCACAGGCAGAGGTTTATCACCCCATTTTCCAACTCAGGTACCTTTGCCACCACAATTGTCACAACCATCACTACCACCAGCACGATCTATGTCTAAAAGAACAGTTCATGGAACAAGGAACTCTGGACAGAGCTCAACAGGCATGAACAAAAAGCAATCTGCCAAGAAATATGCTTTGATTCCTGATAACTTCACCACACTTGAACAGGTTACAGCGGCCTTGAGGAAAGAAGGTTTGGAATCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGCAATGAATGGACTGGCAAAATCACATTCAATAGTAGAAGCCTGCATGCTATTGGAGATACACCTAACCCCTATGAGAAGGCCATCTCCATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACCCGTGATCAAGAAGTGTTTAGCTTTCATAGTGATCATTCACCTTGTCATGGTTTTGAGGAAGTTCTGGCTTGCTACCAAAAAGTAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTTTGCTCCGGCGATTGAGGCTGCAATAGACATAGTTGAGAAAAATCGAGGCCAATTCCATGTGTTGGTTATCATTGCAGATGGCCAGGTTACAAGAAGTGTTGACATTGAAGATGGAAAGCTCAGTCCTCAAGAAGAGAAGACAATCAAAGCAATAGTTGATGCAAGTGCATATCCACTTGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAGAAAGTTTGATGACAAGCTACCAGCTCGTGATTTTGACAATTTTCAGTTTGTAAATTTCACTGACATAATGTCTAAAAACACAAGTCCCTCTGAGAAAGAAGCAGCTTTTGCTCTGGCTGCTCTAATGGAGATTCCTTTCCAATATAAAGCAACCTTGGAATTTGGAATGCTTGGACGTGTAACAGGAAGAGCAAGGAGAATGGTTCCAAAACCTCCTCCTGTTCCTTATTCTAGGCCTGCACCACCACCAGCTCGTGTACCAAGCAATATACCATCATCCCCAGCAGATCAGCAAAACCAAGCTGTTTGTCCAATTTGCCTTACCAATGGAAGGGATTTGGCGTTTGGATGTGGGCACATGACTTGCAGAGATTGTGGATCCAGGTTAACTAATTGTCCCATATGCCGAGAGAGGATCACCAGTCGTCTCAGAGTGTACAGTGGCTGA 1323 0.4346 MGNLFGRKRIRDPQISRHGKGRRGVGISSPTGRGLSPHFPTQVPLPPQLSQPSLPPARSMSKRTVHGTRNSGQSSTGMNKKQSAKKYALIPDNFTTLEQVTAALRKEGLESSNLILGIDFTKSNEWTGKITFNSRSLHAIGDTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTRDQEVFSFHSDHSPCHGFEEVLACYQKVVPNLKLSGPTSFAPAIEAAIDIVEKNRGQFHVLVIIADGQVTRSVDIEDGKLSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDKLPARDFDNFQFVNFTDIMSKNTSPSEKEAAFALAALMEIPFQYKATLEFGMLGRVTGRARRMVPKPPPVPYSRPAPPPARVPSNIPSSPADQQNQAVCPICLTNGRDLAFGCGHMTCRDCGSRLTNCPICRERITSRLRVYSG* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01822 440 PANTHER COPINE FAMILY PROTEIN 1 61 415 - -
Rops7g01822 440 ProSiteProfiles Zinc finger RING-type profile. 395 428 IPR001841 -
Rops7g01822 440 MobiDBLite consensus disorder prediction 360 389 - -
Rops7g01822 440 SMART VWA_4 111 314 IPR002035 -
Rops7g01822 440 Gene3D von Willebrand factor, type A domain 114 325 IPR036465 -
Rops7g01822 440 Pfam Zinc finger, C3HC4 type (RING finger) 393 433 - -
Rops7g01822 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 439 IPR013083 -
Rops7g01822 440 SMART ring_2 395 427 IPR001841 -
Rops7g01822 440 MobiDBLite consensus disorder prediction 360 381 - -
Rops7g01822 440 MobiDBLite consensus disorder prediction 1 83 - -
Rops7g01822 440 Pfam Copine 136 348 IPR010734 -
Rops7g01822 440 SUPERFAMILY vWA-like 112 295 IPR036465 -
Rops7g01822 440 MobiDBLite consensus disorder prediction 54 82 - -
Rops7g01822 440 SUPERFAMILY RING/U-box 387 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01822 Rops-Chr7 29009279 29018117 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01822 7 29009279 29018117 Rops7g01822 7 29009279 29018117 ECH
Rops7g01822 7 29009279 29018117 Rops3g02300 3 46252712 46263400 PCT