Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00312 ATGCAAGACCCAACAGCATTCCAATCCATCAAACCCCACTTTCCTGAACAAGAACAACTCAAATGTCCACGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTATAACCTCTCACAGCCACGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGTGGTACTTTGAGAAACATCCCTGTTGGTGGTGGAGGCAGAAAGAACACAAAACGATCATCTACTAACTCCAAACGCTCTTCTGCATCATCTTCTTCATCACCATCAGTTTCCTCTGCAGCACAGGCTACTGCTCCAGAGTCCGACCCGACCCGAATCTACACCAACCCGGTTGATCCAGGCAGAAGGTTGCTTAACATTGGTGGGAGTTTCAGTTCACTTCTAGCATCAACTGGGCACTTGGGGAACCTTTGGGAGGGTCTAAATTCAAGTGGGTCAAATCTAAAAATGGTGCAAATGGAAGAATTTGGGGAGCATGCAAGTTCTGGCCCAATGGTGAATCCGGGTTCGGGTAGGAATCCCGGGTTGGAGATGCAGAGCAATGGCAATGCAGAGAGCTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTAGTAGTAATGGGTGGTCTAACCTTGCAATTTACACTCCTGGGTCAAGCTTTCAGTAG 666 0.467 MQDPTAFQSIKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGGRKNTKRSSTNSKRSSASSSSSPSVSSAAQATAPESDPTRIYTNPVDPGRRLLNIGGSFSSLLASTGHLGNLWEGLNSSGSNLKMVQMEEFGEHASSGPMVNPGSGRNPGLEMQSNGNAESFLSMQNGDSSCWNGSSNGWSNLAIYTPGSSFQ* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00312 221 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Rops7g00312 221 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Rops7g00312 221 MobiDBLite consensus disorder prediction 61 114 - -
Rops7g00312 221 MobiDBLite consensus disorder prediction 71 107 - -
Rops7g00312 221 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Rops7g00312 221 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 170 IPR045174 GO:0003700|GO:0006355
Rops7g00312 221 MobiDBLite consensus disorder prediction 162 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00312 Rops-Chr7 4007611 4009331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00312 5 140 C2C2-Dof Transcription Factor Family AT1G51700 57.534 1.53e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops7g00312 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00312 - - gmx:100798927 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00312 7 4007611 4009331 Rops7g00312 7 4007611 4009331 ECH
Rops7g00312 7 4007611 4009331 Rops4g02040 4 46667457 46669232 PCT