Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03328 ATGCAAAGCTTCAAAACAGCTGAATCAAATTCACGACTCTATTACCCTTCTTCCTTCTTGCTTCGGGGAGATGAAACCAGCCGAAATCCAACGCGTTTTGCGGATCTTCAACGTTCATTTTTTCAACAACACGATGCTGTTGATTTAAGCTCAAGCTCTGTGTTTGGTGAAAAGTCGAGCAATGTCGCTGTTGTTGCAAGTGACTTGCAGTATGGGACATTCAACACTAACCTTGGGTCTGCTTCAACAGGGGCAGGGTGCATTGAAACAGTGCTACAACCAGTTTTCCAGAGAGGAACCACTCTCGCCAACGTGCCCTTCGGGAACGAGAATTGGGGTGATTCAGGCATGGCAGATAATTGTCAACAAACTGAAGATACTTCCACAGATATTGACACTGATGATAAAAACCAATGTTTCTCAACCGTGTCTTGGTGCAATGGAGTTCAGAATGGGGCATTGGTAGTTGTGGACTCTAAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGATGAGAAGACTCTTCGTCGTCTGGCTCAGAACCGGGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTGCATCAATTGGAGAACAGTCGACTTAGGCTTGCTCAAATAGAGCAAGAGCTTCAACGAGTACGTCAGCAGGGTGCATATATTGCAACTGGAATCACAGGGGATCATGGTCACTCAGTTGTTGGAAATGGTGTGTTGGCATTTGATATGGACTATGCCTGTTGGGTTGATGAGCATCAACGGCTGATCAATGACCTAAGATCAGCTATAAATTCTCAAATGGGTGATAATGAACTGCAGCTTCTCGTTGATGGTGTCATGGCACATTATGATGAATTATATAGGTTGAAGAGCATAGGGGCAAAGGCTAATGTATTTCACATACTTTCTGGGATGTGGAAGACACCCGTGGAAAGATGCTTCATGTGGCTTGGTGGATTCCGTTCATCCGAACTTCTCAAGATAGTTAGAAACCACCTTGAGCCGTTAACCGATCAGCAGTTGATGGGCATTTACAATCTGCAGCAGTCTTCCCAGCAGGCTGAGGATGCTTTATCTCAAGGCATGGAAGCATTGCAACTATCTCTTTCAGAGACACTTTCCTCCACCTCCCTGGGACCCACTGGTTCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCAATTGCAATGGGCAAGCTTGCCACACTAGAGAGTTTCCTTCATCAGGCTGACCTCTTGAGGCAACAAACCCTGCAACAGTTGCAACGAATTTTGACTACCCTCCAAGCTTCTCGTGCTCTCCTTATCATAAATGATTACATTTCGAGACTTCGGGCACTTAATTCATTATGGTTAGCGTGCCCAAAAGAGTACTAG 1383 0.4526 MQSFKTAESNSRLYYPSSFLLRGDETSRNPTRFADLQRSFFQQHDAVDLSSSSVFGEKSSNVAVVASDLQYGTFNTNLGSASTGAGCIETVLQPVFQRGTTLANVPFGNENWGDSGMADNCQQTEDTSTDIDTDDKNQCFSTVSWCNGVQNGALVVVDSKDQSKTKVKAEDEKTLRRLAQNREAARKSRLRKKAYVHQLENSRLRLAQIEQELQRVRQQGAYIATGITGDHGHSVVGNGVLAFDMDYACWVDEHQRLINDLRSAINSQMGDNELQLLVDGVMAHYDELYRLKSIGAKANVFHILSGMWKTPVERCFMWLGGFRSSELLKIVRNHLEPLTDQQLMGIYNLQQSSQQAEDALSQGMEALQLSLSETLSSTSLGPTGSGNVAEYMGQMAIAMGKLATLESFLHQADLLRQQTLQQLQRILTTLQASRALLIINDYISRLRALNSLWLACPKEY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03328 460 SUPERFAMILY Leucine zipper domain 173 216 IPR046347 GO:0003700|GO:0006355
Rops6g03328 460 ProSiteProfiles DOG1 domain profile. 240 456 IPR025422 GO:0006351|GO:0043565
Rops6g03328 460 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 176 191 IPR004827 GO:0003700|GO:0006355
Rops6g03328 460 Gene3D - 172 223 - -
Rops6g03328 460 SMART brlzneu 169 222 IPR004827 GO:0003700|GO:0006355
Rops6g03328 460 Coils Coil 168 188 - -
Rops6g03328 460 CDD bZIP_HBP1b-like 173 225 - -
Rops6g03328 460 PANTHER TRANSCRIPTION FACTOR TGA9 112 459 - -
Rops6g03328 460 Pfam Seed dormancy control 258 332 IPR025422 GO:0006351|GO:0043565
Rops6g03328 460 Coils Coil 192 219 - -
Rops6g03328 460 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 171 215 IPR004827 GO:0003700|GO:0006355
Rops6g03328 460 FunFam BZIP family transcription factor 172 221 - -
Rops6g03328 460 Pfam bZIP transcription factor 173 202 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03328 Rops-Chr6 57757478 57762327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03328 3 459 bZIP Transcription Factor Family AT1G68640 55.882 7.87e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops6g03328 DOG1 2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03328 6 57757478 57762327 Rops6g03328 6 57757478 57762327 ECH