Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03320 ATGGCCACCGATGCTCACGACTCTCGTCGCAAGCATCGCCGATCGTCCTCTCCGGAAGACGTCGATAGATCCACGAAGCGCCACAAGCACCGCCACCACCATAGCCACCGCCACCGCCACGGCCACCATAGCAAAAAACGCGATGAAGAAGAGATTGAATACGATGGTGGAACTGTTGCCGCGGTTCCTTCTCCAATTCACACTCCTAATCGTGCTTCGCACAAGAATCTCCCTGACGATGATGTAGAGGAGGGAGAGATTCTCGAAGACGAGGCTCTTGACGGCGAGATTGGAAAAAAGCAAACGGAATCTGATGCCGAATCTGGTGAAATCGAGGTGAAAGGAGATAGAGATCTTCGATCTGATGAGAAAAATCTGGGACTTCCTGCTAAAAGTTCAAAAACTAAAGGTGAGGACTTGAGCAATGATAAATTTATTAGTCCTGCATTGGATGCAGTAGATGGGACATTGCATCAAAGCCACATCGGTCATGGAATTCGTGAAGATGATGGTTCTCCAAACCACTCAAGAGCTGAGACTCAAGATGGGAGGGATGCTCGAGCTAGTACAGATGATTTGGGCAATGGGTACTTGGATCCTAAATCTTCCAAAGGGGATAAGTGGCAGAATGGGGGTCTTGGGCATTTTAAAGGAAATGAGAAACTAAAAGGTGACTTTGATGATGAAGCACTGGGGGCTAATAGAAGGGAATTAAATTACCGTAGGAATTCATCCTGCGAAAGTGGAGCAGAAAAATATAGAATGTCAGGAAGTTCTCCTTCTCGTGATAGATATAGAAGTCGATCAAGATCAACTGGTCATACCAGGGACAGGTCTCGTTCTCGTAGTATAGTAGAAGAGTATGCTCATTCGAAGAGAAGGCACTCCAGGGAACGAGGGTCCATTCATTATACTAGCAGACACAAGGATGCCCATGACCTTGATGTGGAAAGAGCGAGGGCATCCAGAAGGGAGCACCGTCATGGCAGTATAGAAGATGATAGAAGGGAACATAGTACCAGATATCACAGTCGGGAAGCCCGGGATAGGGATAGGAGTAGGGACAGAGATGTGGATAGGGACTTACACAGGGAAAAGAGACGAGAGGAAATAGGCAGGAATAAGGAGGTTGATTTGGTGCGTAGAAGGGAAAAAGAACGTGAAAGGTATATAAGGGATGCGGAAAAAGACAGGAGCTGGGAGACAGTGTTTGAGAGGGATAGAAGAAGGGAAAAGGAAAGAGATAGGAGTAGGGAAAAGGAAAGAGATAGGAGTAGGGACAGAACAAGGGGCAGTGAGAGAGATAGAGACTGGGAGAGTGAAAGGGATTATAGGAATCGGGAAAGGGATAACATTAAGGAGAGGGAGAGGCGAGATGATGGATATAGGCACAAGGATAAAAATGCTGCGAATGGTAAGAAGCATCTGCAACACGATGATGGTAATGACAGTGGAGATAGATATAGAAAACATTCAAGACATGAAGAAAATGAATACCATGCAGGGAGAAAAAGAAATTCTGATCATCCTGTAAAAGCTTATAACTCTAAGGGAAGTACCATAGAAGAGGATGAAAGGAAACTAAAAAGCAGTGAGGTTGAACAAGATGACTTAGATGAGGATACATTGCCATTGCCTGAACAAGAAGAGGAAGATTTTAACAGGATCAAAGAGGAGAGTAGAAGGAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAACAAGCTGTTGGAAATGAAGGAAAAGACAAGGATGCGGATGCTACCACCGACATTCCTGAAGCAATTGATGGTAAGAATGATGATGCGGAACCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTGAATGTTGCCTCAGAGAAGATATCTGGTACTGGGGGCTTGGGAGAGGGTACTCCAAAGAGTGAGAGGTCAGCTGACAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCAGGAAAAGGAGATGGTTTACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGATGCAGAGGGGTATTACAGCCATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTACGGGCAAAGAATCTAAAAATTGGTAATGGTGAGCCAGAAGAAGTAGCAATAAAAATTATACGTAACAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTAAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCACTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGAAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGAGCATATGCAAAACAGCTTTTTATTGCGCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGATATAAAGCCTGATAATATGTTGGTGAATGAGGCTAAAAATGTTTTAAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTCACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATACTTGGATTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGCTGTTTGTATGAATTGTACACAGGGAAGGTTCTTTTTCCTGGGCTTACAAACAATGACATGTTGCGGCTTCACATGGAACTGAAGGGCCCTTTTCCAAAGAAGATGCTACGAAAGGGGGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTAGCTACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGATGATTCTCAACATAAAGCCAAAAGATATTGGGACAATCATCACTGGCTCTCCTGGGGAGGATCCAAAAATGTTATCTAACTTTAAGGATCTTCTGGAAAAAATTTTTGTCTTGGATCCAGACAAGAGGCGTACAGTTGTCTGGCGGTTCTTTCAGTGGGATGTATTGTTTCTATTGATGCATATCACTGGTTTGAGGCATCCCTCCCATGCTTAG 3093 0.4339 MATDAHDSRRKHRRSSSPEDVDRSTKRHKHRHHHSHRHRHGHHSKKRDEEEIEYDGGTVAAVPSPIHTPNRASHKNLPDDDVEEGEILEDEALDGEIGKKQTESDAESGEIEVKGDRDLRSDEKNLGLPAKSSKTKGEDLSNDKFISPALDAVDGTLHQSHIGHGIREDDGSPNHSRAETQDGRDARASTDDLGNGYLDPKSSKGDKWQNGGLGHFKGNEKLKGDFDDEALGANRRELNYRRNSSCESGAEKYRMSGSSPSRDRYRSRSRSTGHTRDRSRSRSIVEEYAHSKRRHSRERGSIHYTSRHKDAHDLDVERARASRREHRHGSIEDDRREHSTRYHSREARDRDRSRDRDVDRDLHREKRREEIGRNKEVDLVRRREKERERYIRDAEKDRSWETVFERDRRREKERDRSREKERDRSRDRTRGSERDRDWESERDYRNRERDNIKERERRDDGYRHKDKNAANGKKHLQHDDGNDSGDRYRKHSRHEENEYHAGRKRNSDHPVKAYNSKGSTIEEDERKLKSSEVEQDDLDEDTLPLPEQEEEDFNRIKEESRRRREAIMEKYKKQHQQVEQAVGNEGKDKDADATTDIPEAIDGKNDDAEPSFAVGKSPENVNVASEKISGTGGLGEGTPKSERSADKFCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSHRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKIGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKTIKRMILNIKPKDIGTIITGSPGEDPKMLSNFKDLLEKIFVLDPDKRRTVVWRFFQWDVLFLLMHITGLRHPSHA* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03320 1030 MobiDBLite consensus disorder prediction 26 43 - -
Rops6g03320 1030 Gene3D Phosphorylase Kinase; domain 1 670 758 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 257 294 - -
Rops6g03320 1030 FunFam Serine/threonine-protein kinase PRP4 homolog 759 1009 - -
Rops6g03320 1030 Pfam Protein kinase domain 701 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03320 1030 ProSiteProfiles Protein kinase domain profile. 699 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03320 1030 MobiDBLite consensus disorder prediction 156 388 - -
Rops6g03320 1030 Coils Coil 521 541 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 518 534 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 626 645 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 548 593 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 161 189 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 303 388 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 92 129 - -
Rops6g03320 1030 CDD STKc_PRP4 698 1005 IPR044092 GO:0004674|GO:0006468|GO:0045292
Rops6g03320 1030 MobiDBLite consensus disorder prediction 1 142 - -
Rops6g03320 1030 SMART serkin_6 699 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03320 1030 FunFam serine/threonine-protein kinase PRP4 homolog 670 758 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 405 593 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 405 511 - -
Rops6g03320 1030 Gene3D Transferase(Phosphotransferase) domain 1 759 1007 - -
Rops6g03320 1030 PANTHER DUAL SPECIFICITY PROTEIN KINASE 420 1004 - -
Rops6g03320 1030 MobiDBLite consensus disorder prediction 218 242 - -
Rops6g03320 1030 SUPERFAMILY Protein kinase-like (PK-like) 686 1005 IPR011009 -
Rops6g03320 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Rops6g03320 1030 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03320 Rops-Chr6 57689957 57697420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03320 652 1005 MAP Kinase Gene Family AT2G18170 30.000 1.30e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Rops6g03320 Pkinase 5.4e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03320 6 57689957 57697420 Rops6g03320 6 57689957 57697420 ECH