LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g03316	ATGGCTTCTCGTAATCCATTAGCTGTTGTCTTTCTCTCTTCCCTTCTTCTAACTTGCTTTCTGTGTGTGGCTGAAGAAGCTAGCTCTTCTTCTCCCAAGGCCACCAAAATTGGCCAAGGCTACCGTCTGATATCTATTGAAGATGACCCTGATGGTGCCATCACGGGGCTCCTCCAAGTTAAGGAGAAGAATGATATCTATGGTCCTGATATTCCCCTTTTACGCTTCTATGTCAAGCATGAGACTGAGAATCGTTTGAGGGTACACATCACTGATGCTAAGAAACAAAGGTGGGAGGTTCCTTACGATCTTTTGCCGAGGGAGGAACCACCGCCTCTGAAGCAGAACATTAAGAGGTCGAGGAAAATCTCAACATTAGTGTCAGAAGAACACGCAAGCTCTGAGCTTGTTTTCAGTTACACTTCAGACCCGTTTAGCTTTTCAGTGAAAAGGAAGTCCAATGGAGATACCCTTTTCGATTCCAGCTCTGCTGAGTCAGACCCATTTGGCCCATTGGTCTTCAAGGACCAGTACCTGGAAATATCTACCAAATTGCCGAAAGATTCCTCTTTGTATGGTCTGGGAGAGAACACACAGCCACACGGGATTAAATTGTACCCAAATGACCCTTACACTTTGTATACCACTGATTTATCAGCTGTTAATCTAAATACTGATTTATACGGGTCACACCCTGTATACATGGACCTCAGAAATGAAGGTGGCAAACCTTATGCTCATGGTGTTCTGTTGCTGAATAGTAATGGAATGGATGTTTTCTACAAAGGAACCTCTCTGACATACAAGATTATCGGAGGGGTACTTGATTTTTACTTCTTTGCAGGACCCACGCCTCTGAATGTTGTTGATCAGTACACTTCTTTCATTGGTAGACCAGCTCCCATGCCTTACTGGGCTTTCGGATTCCACCAATGCAGATGGGGCTATCACAACCTCTCTGTGGTAGAAGATGTTGTGGAGAATTACAAGAAGGCTAAAATTCCACTTGATGTGATCTGGAATGATGATGATCACATGGATGGCCACAAGGATTTCACACTCAATCCAGTTAACTACCCTCGTCCGAAGCTTTTAAACTTTCTGGACAGAATACACAGCATTGGCATGAAATACATTGTGATCATTGATCCAGGAATTGCTGTTAACTCCAGTTATGGTGTTTATCAAAGGGGTATGGCTAATGATGTTTTTATCAAGCATGAGGGTGAACCCTTCTTGGCTCAAGTTTGGCCAGGAGCAGTTTACTTCCCTGATTTTCTCAATCCAAAAACAGTTTCTTGGTGGGGTGATGAGATCCACCGCTTCCATGAACTTATCCCTGTTGATGGCCTATGGATTGACATGAATGAAGTTTCAAATTTCTGCACTGGAAAGTGCAAAATTCCAGAGGGAAGGTTGTGTCCAATTCTGAATGGAAAAGGACCTAATTCAACATGTTGTTTAGATTGCAAAAACATCACAAGCACGCGATGGGACGATCCTCCCTACAAAATCAATGCTTCAGGAGTTCAAGCTCCTATAGGCTTCAAAACTATAGCCACTAGTGCAATTCACTATAATGGTGTTTTGGAATATGATGCTCACAGCCTTTTTGGTTTCTCTCAAGCCATTGCAACTCACAAGGCCCTTCAAGGGCTTCAAGGAAAAAGGCCATTTGTTTTGTCCCGCTCCACTTATGTTGGTTCAGGCAAATATGCAGCACATTGGACTGGTGACAATAAGGGCACATGGGAGGACTTGAGATACTCAATATCTACAATACTCAATTTTGGAATATTTGGCATGCCAATGGTTGGTTCTGATATATGTGGTTTCTATCCAGCACCCACTGAAGAGCTTTGTAATCGTTGGATTGAAGTTGGTGCTTTCTATCCTTTCTCAAGGGATCATTCAAGCTATGACTCCCCTAGACAGGAACTTTACCAATGGGACTCAGTAGCTGAGTCTGCTCGAAATGCTTTGGGTATGAGGTATAAGCTCCTCCCATATCTGTACACACTGAACTATGAGGCTCATGTTAGTGGAGCCCCAATTGCCAGGCCTCTTTTCTTCTCATTTCCAACTTCTGTTGAATGTTATGGCCTAAGCACACAGTTCTTACTTGGGAGCAGTTTAATGATTTCTCCTGTGCTTGAGCAAGGGAAAACAGAAGTTAAAGCACTCTTTCCTCCTGGAACTTGGTATAGTTTGTTTGATTTCACACAAGCCATTGATTCAAAAGATGGAACCTATGTTACCCTTGATGCACCTCTGCATGTGATCAATGTGCATTTATATCAGAATACAATTCTTCCAATGCAACAGGGTGGAATGGTATCTAAGGATGCTAGAATGACACCCTTCAGTCTCATTGTGACCTTCCCAGCTGGTGCCACCGAAGGAGAAGCTAAAGGGAATCTATTCCTTGATGATGATGAGCAGCCAGAAATGAAGCTTGGGAATGGTTATTCAACCTACATTGATTTCCATGCAACTGTCAAAGAAGGAATTGTGAAAGTTTGGTCAGAAGTCCAAGAGGGCAAGTTTGCTTTAGATAAAGGTTGGGTTATTGACACAATAAATGTGTTGGGATTAAATGGAAGTAAAACACTAACTACAATTGAGATAGATGGAGAACCACCAATGGGTGTCTCAAATGTGAAAGTAAGTACATCTGAACATAGGTACTTGTATGGGCAGGGAGATGGAGAAGAGAAGATGGTGATGGTAGAGTTGAAGGGCTTGAATATCCCTGTTGGTAAAAATTTTGCTTTGACGTGGAAGATGGGATCATAA	2796	0.4267	MASRNPLAVVFLSSLLLTCFLCVAEEASSSSPKATKIGQGYRLISIEDDPDGAITGLLQVKEKNDIYGPDIPLLRFYVKHETENRLRVHITDAKKQRWEVPYDLLPREEPPPLKQNIKRSRKISTLVSEEHASSELVFSYTSDPFSFSVKRKSNGDTLFDSSSAESDPFGPLVFKDQYLEISTKLPKDSSLYGLGENTQPHGIKLYPNDPYTLYTTDLSAVNLNTDLYGSHPVYMDLRNEGGKPYAHGVLLLNSNGMDVFYKGTSLTYKIIGGVLDFYFFAGPTPLNVVDQYTSFIGRPAPMPYWAFGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDHMDGHKDFTLNPVNYPRPKLLNFLDRIHSIGMKYIVIIDPGIAVNSSYGVYQRGMANDVFIKHEGEPFLAQVWPGAVYFPDFLNPKTVSWWGDEIHRFHELIPVDGLWIDMNEVSNFCTGKCKIPEGRLCPILNGKGPNSTCCLDCKNITSTRWDDPPYKINASGVQAPIGFKTIATSAIHYNGVLEYDAHSLFGFSQAIATHKALQGLQGKRPFVLSRSTYVGSGKYAAHWTGDNKGTWEDLRYSISTILNFGIFGMPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHSSYDSPRQELYQWDSVAESARNALGMRYKLLPYLYTLNYEAHVSGAPIARPLFFSFPTSVECYGLSTQFLLGSSLMISPVLEQGKTEVKALFPPGTWYSLFDFTQAIDSKDGTYVTLDAPLHVINVHLYQNTILPMQQGGMVSKDARMTPFSLIVTFPAGATEGEAKGNLFLDDDEQPEMKLGNGYSTYIDFHATVKEGIVKVWSEVQEGKFALDKGWVIDTINVLGLNGSKTLTTIEIDGEPPMGVSNVKVSTSEHRYLYGQGDGEEKMVMVELKGLNIPVGKNFALTWKMGS*	932

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g03316	931	ProSitePatterns	Glycosyl hydrolases family 31 active site.	450	457	IPR030458	-
	Rops6g03316	931	Pfam	Glycosyl hydrolases family 31	278	771	IPR000322	GO:0004553\|GO:0005975
	Rops6g03316	931	Gene3D	Glycosidases	299	666	-	-
	Rops6g03316	931	SUPERFAMILY	Galactose mutarotase-like	38	285	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Rops6g03316	931	SUPERFAMILY	Glycosyl hydrolase domain	684	765	-	-
	Rops6g03316	931	CDD	GH31_MGAM_SI_GAA	297	679	-	-
	Rops6g03316	931	FunFam	Alpha-glucosidase 1	667	767	-	-
	Rops6g03316	931	FunFam	Alpha-glucosidase 1	34	298	-	-
	Rops6g03316	931	PANTHER	ALPHA-GLUCOSIDASE	46	886	-	-
	Rops6g03316	931	Gene3D	-	769	931	IPR013780	-
	Rops6g03316	931	SUPERFAMILY	(Trans)glycosidases	288	682	IPR017853	-
	Rops6g03316	931	Gene3D	-	667	766	IPR013780	-
	Rops6g03316	931	Pfam	Galactose mutarotase-like	189	257	IPR025887	-
	Rops6g03316	931	Pfam	N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase	55	187	IPR031727	-
	Rops6g03316	931	CDD	GH31_N	179	297	-	-
	Rops6g03316	931	Gene3D	glycosyl hydrolase (family 31)	34	298	-	-
	Rops6g03316	931	FunFam	Maltase-glucoamylase, intestinal	299	666	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g03316	Rops-Chr6	57601497	57605692	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g03316	37	930	Glycoside Hydrolase	AT1G68560	74.078	0.0	1422

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g03316	6	57601497	57605692	Rops6g03316	6	57601497	57605692	ECH