Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03314 ATGTCTGAGCCTCGGAAACAACCAGCAAGTAGAGCCAAACTAAAGCCTCATCCCTTGCAAGTGCCAAAGATGACAAGGAAACTGCGCATATTTTATAACGATCCTGATGCCACTGATTCATCTGAAGATGAGTCAGAGCTGCATCCTAAGAAAATAAGACGAGCCTTCCATGAGATCTCACTTCCTCTTGTTTCTGCTATCTCCACCTCCACTGAATCTAGCACTTTTGAGGGGAACAAGAACAGTGATGCATTTAAGACTTGCATGGAACCTCAAAACAAGAAGAGGGTTTCAAGCCAGACTCCATCAACAAGGAGACAATCTTCTGCCAAATACAAAGGAGTCAGGCAGAGGAAGTGGGGAAAATGGGCTGCTGAGATTAGGGACCCATTCAAGGGTACCCGTGTATGGCTAGGCACTTTCAACACTGCTGAAGAGGCTTCCCAAGCCTATGAGGCCAAAAGGCTGGAATATGATGAAAGGGAAAAGGCTCAATCCGGCAACAATGTTTCTTCTATTCCACCTTTGGCTACAACTTCTGATAAAACTAATTATTGCAACTCTTCTACTGCTTGTAACTCCTCTTCTGCTTCTGCAGTAGAAAAATTTTCTGCTACTTCAGAAGAAAAATTTTCTACTTCAGAAGACTCAGAGAGCTTGATCTCACACACATCACCATCCTCTGTGCTTGAGTTGGAAACAGCTTCCAATTCAAATGAGAAGGATGATATTGCAAGCAAGGAAGCTTTTGAGGCTAGTGATTTGGTGGCTGAACTTGCGGGACTAGAAATACCAGACTTTGGGCTTTTGAGCTTGCCTCTACCATCTGCTGGTGCTGCTGCTCAATCCGTGGCTGAGCCCAACCTTGGGCTTGATTTTGATTTGTTGTCATTTAATGATTATGGGCAGGGTTTTGATGATCTTGGTGGTCTTGAGGATATCCATATATGTGGGTTTGATGACAATGAGCCTAGTGAGCTACCTGATTTTGATTTTGGTGATTTTGGTGCTGAGGAGTTTGCTGGTTGGATTGAGGAACCACTCCATATACCTTGTGCCTAA 1062 0.4407 MSEPRKQPASRAKLKPHPLQVPKMTRKLRIFYNDPDATDSSEDESELHPKKIRRAFHEISLPLVSAISTSTESSTFEGNKNSDAFKTCMEPQNKKRVSSQTPSTRRQSSAKYKGVRQRKWGKWAAEIRDPFKGTRVWLGTFNTAEEASQAYEAKRLEYDEREKAQSGNNVSSIPPLATTSDKTNYCNSSTACNSSSASAVEKFSATSEEKFSTSEDSESLISHTSPSSVLELETASNSNEKDDIASKEAFEASDLVAELAGLEIPDFGLLSLPLPSAGAAAQSVAEPNLGLDFDLLSFNDYGQGFDDLGGLEDIHICGFDDNEPSELPDFDFGDFGAEEFAGWIEEPLHIPCA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03314 353 MobiDBLite consensus disorder prediction 160 180 - -
Rops6g03314 353 MobiDBLite consensus disorder prediction 217 235 - -
Rops6g03314 353 CDD AP2 110 153 IPR001471 GO:0003700|GO:0006355
Rops6g03314 353 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Rops6g03314 353 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Rops6g03314 353 Gene3D AP2/ERF domain 110 167 IPR036955 GO:0003700|GO:0006355
Rops6g03314 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 236 - -
Rops6g03314 353 MobiDBLite consensus disorder prediction 73 110 - -
Rops6g03314 353 MobiDBLite consensus disorder prediction 209 243 - -
Rops6g03314 353 MobiDBLite consensus disorder prediction 1 26 - -
Rops6g03314 353 ProSiteProfiles AP2/ERF domain profile. 111 171 IPR001471 GO:0003700|GO:0006355
Rops6g03314 353 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Rops6g03314 353 SUPERFAMILY DNA-binding domain 111 159 IPR016177 GO:0003677
Rops6g03314 353 MobiDBLite consensus disorder prediction 73 112 - -
Rops6g03314 353 MobiDBLite consensus disorder prediction 165 180 - -
Rops6g03314 353 SMART rav1_2 111 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03314 Rops-Chr6 57542015 57544170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03314 6 352 AP2-EREBP Transcription Factor Family AT1G68550 36.034 4.89e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g03314 AP2 3.9e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03314 6 57542015 57544170 Rops6g03314 6 57542015 57544170 ECH